RetrogeneDB ID: | retro_fcat_905 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:66669321..66669567(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000022883 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFA4 | ||
Ensembl ID: | ENSFCAG00000024790 | ||
Aliases: | None | ||
Description: | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa [Source:HGNC Symbol;Acc:7687] |
Percent Identity: | 90.24 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MLRQIFGQAKKHPSLIPLFIFIGAGGTGAALYVLRLALFNPDVSWDRKNNPEPWNKLGPNDQYKFYSVNV |
MLRQIF.QAKKH.SLIPLFIFIGAGG.G.ALYVL.LALFNPDVS.DRKNNPEPWN.LGPNDQYKFYSVNV | |
Retrocopy | MLRQIFSQAKKHRSLIPLFIFIGAGGAGPALYVLLLALFNPDVSCDRKNNPEPWNTLGPNDQYKFYSVNV |
Parental | DYSKLKKEGPDF |
.YSKLKKEGPDF | |
Retrocopy | NYSKLKKEGPDF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 125 .91 RPM |
SRP017611_kidney | 0 .31 RPM | 136 .55 RPM |
SRP017611_liver | 0 .10 RPM | 72 .68 RPM |