RetrogeneDB ID: | retro_ocun_41 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | X:81654197..81654446(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000014194 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFA4 | ||
Ensembl ID: | ENSOCUG00000029372 | ||
Aliases: | None | ||
Description: | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa [Source:HGNC Symbol;Acc:7687] |
Percent Identity: | 98.44 % |
Parental protein coverage: | 68.82 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MLRQIIGQAKKHPSLIPLFIFIGAGGTGAALYVMRLALFNPDVSWDRKNNPEPWNKLGPNDQYK |
MLRQIIGQAKKHPSLIPLFIFIGAGGTGAALYVMRLALFNPDVSWDRKNN.EPWNKLGPNDQYK | |
Retrocopy | MLRQIIGQAKKHPSLIPLFIFIGAGGTGAALYVMRLALFNPDVSWDRKNNLEPWNKLGPNDQYK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 48 .29 RPM | 81 .35 RPM |
SRP017611_kidney | 73 .48 RPM | 127 .91 RPM |
SRP017611_liver | 6 .17 RPM | 10 .94 RPM |