Parental gene:

NDUFA4, ENSBTAG00000011145

Aliases:None
Description:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:Q01321]
Organism:Cow (Bos taurus)
Coordinates:4:18973420..18980828(-)


>ENSBTAG00000011145
ATGCTCCGCCAGATCATCGGTCAGGCCAAGAGGCATCCTAGCTTGATCCCCCTCTTCATATTTATTGGAGCAGGAGGGAC
TGGAGCAGCACTGTATGTCACGCGCCTGGCATTGTTCAATCCCGATGTCAGTTGGGACAGAAAGAATAACCCAGAACCCT
GGAACAAACTAGGTCCTAATGATCAGTACAAGTTCTACTCTGTGAATGTAGATTACAGCAAACTGAAGAAAGAAGGTCCA
GACTTCTAA

Library Parental gene expression (RPM)
ERP005899_liver 155 .87 RPM
ERP005899_muscle 125 .90 RPM
SRP017611_brain 75 .65 RPM
SRP017611_kidney 195 .66 RPM
SRP017611_liver 64 .94 RPM
SRP030211_testis 24 .87 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002493 ortholog_one2many 10 retrogenes
retro_amel_1356, retro_amel_1633, retro_amel_18, retro_amel_1800, retro_amel_1866, retro_amel_533, retro_amel_608, retro_amel_638, retro_amel_845, retro_amel_955,
Callithrix jacchus ENSCJAG00000000748 possible_ortholog 3 retrogenes
retro_cjac_3291, retro_cjac_36, retro_cjac_90,
Equus caballus ENSECAG00000026987 ortholog_one2one 1 retrogene
retro_ecab_370,
Felis catus ENSFCAG00000024790 ortholog_one2one 4 retrogenes
retro_fcat_261, retro_fcat_449, retro_fcat_459, retro_fcat_905,
Gorilla gorilla ENSGGOG00000001437 possible_ortholog 3 retrogenes
retro_ggor_249, retro_ggor_30, retro_ggor_567,
Myotis lucifugus ENSMLUG00000006470 ortholog_one2one 6 retrogenes
retro_mluc_1778, retro_mluc_1821, retro_mluc_329, retro_mluc_450, retro_mluc_517, retro_mluc_849,
Macaca mulatta ENSMMUG00000020894 possible_ortholog 2 retrogenes
retro_mmul_272, retro_mmul_274,
Monodelphis domestica ENSMODG00000014107 ortholog_one2one 2 retrogenes
retro_mdom_1095, retro_mdom_1593,
Mustela putorius furo ENSMPUG00000014152 ortholog_one2one 8 retrogenes
retro_mputfur_1127, retro_mputfur_1600, retro_mputfur_416, retro_mputfur_696, retro_mputfur_711, retro_mputfur_790, retro_mputfur_827, retro_mputfur_880,
Mus musculus ENSMUSG00000029632 ortholog_one2one 4 retrogenes
retro_mmus_2172, retro_mmus_3219, retro_mmus_3412, retro_mmus_3620,
Oryctolagus cuniculus ENSOCUG00000029372 possible_ortholog 1 retrogene
retro_ocun_41,
Otolemur garnettii ENSOGAG00000000358 possible_ortholog 17 retrogenes
retro_ogar_1023, retro_ogar_1026, retro_ogar_1319, retro_ogar_1403, retro_ogar_1566, retro_ogar_1960, retro_ogar_1976, retro_ogar_2050, retro_ogar_2350, retro_ogar_2528, retro_ogar_3023, retro_ogar_3413, retro_ogar_3434, retro_ogar_3457, retro_ogar_694, retro_ogar_731, retro_ogar_997,
Ochotona princeps ENSOPRG00000014186 ortholog_one2one 3 retrogenes
retro_opri_1138, retro_opri_275, retro_opri_633,
Pongo abelii ENSPPYG00000017780 possible_ortholog 5 retrogenes
retro_pabe_2296, retro_pabe_24, retro_pabe_301, retro_pabe_3339, retro_pabe_678,
Pteropus vampyrus ENSPVAG00000006660 ortholog_one2one 5 retrogenes
retro_pvam_1092, retro_pvam_1436, retro_pvam_1441, retro_pvam_545, retro_pvam_798,
Rattus norvegicus ENSRNOG00000005512 ortholog_one2one 3 retrogenes
retro_rnor_1880, retro_rnor_2327, retro_rnor_2985,
Sorex araneus ENSSARG00000011125 ortholog_one2one 8 retrogenes
retro_sara_160, retro_sara_203, retro_sara_316, retro_sara_339, retro_sara_49, retro_sara_536, retro_sara_659, retro_sara_747,
Sus scrofa ENSSSCG00000024313 ortholog_one2one 6 retrogenes
retro_sscr_1155, retro_sscr_367, retro_sscr_552, retro_sscr_642, retro_sscr_682, retro_sscr_733,
Tupaia belangeri ENSTBEG00000016629 ortholog_one2one 16 retrogenes
retro_tbel_1049, retro_tbel_1848, retro_tbel_2008, retro_tbel_2058, retro_tbel_2194, retro_tbel_2274, retro_tbel_2423, retro_tbel_2761, retro_tbel_3262, retro_tbel_4255, retro_tbel_4309, retro_tbel_436, retro_tbel_4380, retro_tbel_4426, retro_tbel_4719, retro_tbel_815,
Tursiops truncatus ENSTTRG00000013045 ortholog_one2one 8 retrogenes
retro_ttru_1057, retro_ttru_132, retro_ttru_1709, retro_ttru_1745, retro_ttru_1841, retro_ttru_218, retro_ttru_257, retro_ttru_308,
Vicugna pacos ENSVPAG00000010003 ortholog_one2one 1 retrogene
retro_vpac_262,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_645 74.67 90.24
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2. retro_btau_800 78.05 100.00
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3. retro_btau_1075 60.71 67.07
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4. retro_btau_1155 62.82 90.24
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5. retro_btau_1375 71.64 80.49
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6. retro_btau_1454 77.11 100.00
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7. retro_btau_1710 76.56 78.05
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Download FASTA sequences of all ENSBTAG00000011145 retrocopies