Parental gene:

NDUFA4, ENSOCUG00000029372

Aliases:None
Description:NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa [Source:HGNC Symbol;Acc:7687]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:10:28056470..28058742(+)


>ENSOCUG00000029372
ATGCTTCGCCAGATCATCGGTCAGGCTAAGAAGCACCCAAGCTTGATCCCCCTCTTCATATTTATTGGAGCAGGAGGTAC
TGGAGCTGCATTGTATGTCATGCGTCTGGCATTGTTCAATCCAGATGTCAGTTGGGACAGAAAGAATAACCCAGAACCCT
GGAACAAACTGGGTCCCAATGATCAATACAAGGTAAGCTACTGTTGTTACAGAATTGTTGGAAAATGTGTGGTGATAAAT
ATTTATGTGGTATTTTTCTCTGGAAATTGGATATATAAGTAA

Library Parental gene expression (RPM)
SRP017611_brain 81 .35 RPM
SRP017611_kidney 127 .91 RPM
SRP017611_liver 10 .94 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002493 possible_ortholog 10 retrogenes
retro_amel_1356, retro_amel_1633, retro_amel_18, retro_amel_1800, retro_amel_1866, retro_amel_533, retro_amel_608, retro_amel_638, retro_amel_845, retro_amel_955,
Bos taurus ENSBTAG00000011145 possible_ortholog 7 retrogenes
retro_btau_1075, retro_btau_1155, retro_btau_1375, retro_btau_1454, retro_btau_1710, retro_btau_645, retro_btau_800,
Choloepus hoffmanni ENSCHOG00000012330 ortholog_one2one 1 retrogene
retro_chof_2667,
Callithrix jacchus ENSCJAG00000000748 ortholog_one2many 3 retrogenes
retro_cjac_3291, retro_cjac_36, retro_cjac_90,
Dasypus novemcinctus ENSDNOG00000011217 ortholog_one2one 12 retrogenes
retro_dnov_1874, retro_dnov_1921, retro_dnov_2015, retro_dnov_2258, retro_dnov_2566, retro_dnov_2567, retro_dnov_2641, retro_dnov_349, retro_dnov_506, retro_dnov_725, retro_dnov_744, retro_dnov_764,
Equus caballus ENSECAG00000026987 possible_ortholog 1 retrogene
retro_ecab_370,
Felis catus ENSFCAG00000024790 possible_ortholog 4 retrogenes
retro_fcat_261, retro_fcat_449, retro_fcat_459, retro_fcat_905,
Homo sapiens ENSG00000189043 ortholog_one2one 18 retrogenes
retro_hsap_1459, retro_hsap_200, retro_hsap_2374, retro_hsap_2386, retro_hsap_259, retro_hsap_2685, retro_hsap_2726, retro_hsap_285, retro_hsap_3241, retro_hsap_4067, retro_hsap_4188, retro_hsap_4292, retro_hsap_4699, retro_hsap_4700, retro_hsap_4750, retro_hsap_4856, retro_hsap_650, retro_hsap_877,
Gorilla gorilla ENSGGOG00000001437 ortholog_one2many 3 retrogenes
retro_ggor_249, retro_ggor_30, retro_ggor_567,
Microcebus murinus ENSMICG00000013999 ortholog_one2one 5 retrogenes
retro_mmur_1225, retro_mmur_1314, retro_mmur_133, retro_mmur_341, retro_mmur_696,
Myotis lucifugus ENSMLUG00000006470 possible_ortholog 6 retrogenes
retro_mluc_1778, retro_mluc_1821, retro_mluc_329, retro_mluc_450, retro_mluc_517, retro_mluc_849,
Macaca mulatta ENSMMUG00000020894 ortholog_one2many 2 retrogenes
retro_mmul_272, retro_mmul_274,
Monodelphis domestica ENSMODG00000014107 ortholog_one2many 2 retrogenes
retro_mdom_1095, retro_mdom_1593,
Mustela putorius furo ENSMPUG00000014152 possible_ortholog 8 retrogenes
retro_mputfur_1127, retro_mputfur_1600, retro_mputfur_416, retro_mputfur_696, retro_mputfur_711, retro_mputfur_790, retro_mputfur_827, retro_mputfur_880,
Mus musculus ENSMUSG00000029632 possible_ortholog 4 retrogenes
retro_mmus_2172, retro_mmus_3219, retro_mmus_3412, retro_mmus_3620,
Otolemur garnettii ENSOGAG00000000358 ortholog_one2many 17 retrogenes
retro_ogar_1023, retro_ogar_1026, retro_ogar_1319, retro_ogar_1403, retro_ogar_1566, retro_ogar_1960, retro_ogar_1976, retro_ogar_2050, retro_ogar_2350, retro_ogar_2528, retro_ogar_3023, retro_ogar_3413, retro_ogar_3434, retro_ogar_3457, retro_ogar_694, retro_ogar_731, retro_ogar_997,
Ochotona princeps ENSOPRG00000014186 possible_ortholog 3 retrogenes
retro_opri_1138, retro_opri_275, retro_opri_633,
Pongo abelii ENSPPYG00000017780 ortholog_one2many 5 retrogenes
retro_pabe_2296, retro_pabe_24, retro_pabe_301, retro_pabe_3339, retro_pabe_678,
Pan troglodytes ENSPTRG00000018934 ortholog_one2one 19 retrogenes
retro_ptro_1134, retro_ptro_1736, retro_ptro_1745, retro_ptro_1811, retro_ptro_182, retro_ptro_1842, retro_ptro_219, retro_ptro_2191, retro_ptro_235, retro_ptro_2756, retro_ptro_2844, retro_ptro_2908, retro_ptro_3034, retro_ptro_3123, retro_ptro_3165, retro_ptro_3233, retro_ptro_473, retro_ptro_766, retro_ptro_993,
Pteropus vampyrus ENSPVAG00000006660 possible_ortholog 5 retrogenes
retro_pvam_1092, retro_pvam_1436, retro_pvam_1441, retro_pvam_545, retro_pvam_798,
Rattus norvegicus ENSRNOG00000005512 possible_ortholog 3 retrogenes
retro_rnor_1880, retro_rnor_2327, retro_rnor_2985,
Sorex araneus ENSSARG00000011125 possible_ortholog 8 retrogenes
retro_sara_160, retro_sara_203, retro_sara_316, retro_sara_339, retro_sara_49, retro_sara_536, retro_sara_659, retro_sara_747,
Sus scrofa ENSSSCG00000024313 possible_ortholog 6 retrogenes
retro_sscr_1155, retro_sscr_367, retro_sscr_552, retro_sscr_642, retro_sscr_682, retro_sscr_733,
Tupaia belangeri ENSTBEG00000016629 ortholog_one2many 16 retrogenes
retro_tbel_1049, retro_tbel_1848, retro_tbel_2008, retro_tbel_2058, retro_tbel_2194, retro_tbel_2274, retro_tbel_2423, retro_tbel_2761, retro_tbel_3262, retro_tbel_4255, retro_tbel_4309, retro_tbel_436, retro_tbel_4380, retro_tbel_4426, retro_tbel_4719, retro_tbel_815,
Tarsius syrichta ENSTSYG00000000041 ortholog_one2one 15 retrogenes
retro_tsyr_1427, retro_tsyr_1650, retro_tsyr_1766, retro_tsyr_1948, retro_tsyr_1973, retro_tsyr_1974, retro_tsyr_198, retro_tsyr_270, retro_tsyr_425, retro_tsyr_473, retro_tsyr_492, retro_tsyr_659, retro_tsyr_685, retro_tsyr_821, retro_tsyr_937,
Tursiops truncatus ENSTTRG00000013045 possible_ortholog 8 retrogenes
retro_ttru_1057, retro_ttru_132, retro_ttru_1709, retro_ttru_1745, retro_ttru_1841, retro_ttru_218, retro_ttru_257, retro_ttru_308,
Vicugna pacos ENSVPAG00000010003 possible_ortholog 1 retrogene
retro_vpac_262,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_41 98.44 68.82
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Download FASTA sequences of all ENSOCUG00000029372 retrocopies