RetrogeneDB ID:

retro_ogar_1976

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873578.1:5423415..5423632(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000000358
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_1976
CAACACCTGGGCTTACACCCCCTTTTTGTACTTACCGGAGCCAGAGGTACTAGAGTAGCACCGTATGTCTTACATCTGGC
ATTGTTCAGTCCAGATGTGAGTTGGGACAGAAATAACAACCCAGAATCCTGGAACAAACTGGGTCCCAATGATCAATACA
AGTTCTACTCAGTTGAATGTGGATTACAGCAAACTAAAGAAAGAAGGTCCAGACTTC

ORF - retro_ogar_1976 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 75.34 %
Parental protein coverage: 87.8 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalKHPSLIPLFIFIGAGGTGATLYVLRLALFNPDVSWDRKNNPEPWNKLGPTDQYKFYSV-NVDYSKLKKEG
.H..L.PLF...GA.GT....YVL.LALF.PDVSWDR.NNPE.WNKLGP.DQYKFYSV.NVDYSKLKKEG
RetrocopyQHLGLHPLFVLTGARGTRVAPYVLHLALFSPDVSWDRNNNPESWNKLGPNDQYKFYSV>NVDYSKLKKEG
ParentalPDF
PDF
RetrocopyPDF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_1976 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 28 parental genes, and 193 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG0000000249310 retrocopies
Bos taurus ENSBTAG000000111457 retrocopies
Choloepus hoffmanni ENSCHOG000000123301 retrocopy
Callithrix jacchus ENSCJAG000000007483 retrocopies
Dasypus novemcinctus ENSDNOG0000001121712 retrocopies
Equus caballus ENSECAG000000269871 retrocopy
Felis catus ENSFCAG000000247904 retrocopies
Homo sapiens ENSG0000018904318 retrocopies
Gorilla gorilla ENSGGOG000000014373 retrocopies
Microcebus murinus ENSMICG000000139995 retrocopies
Myotis lucifugus ENSMLUG000000064706 retrocopies
Macaca mulatta ENSMMUG000000208942 retrocopies
Monodelphis domestica ENSMODG000000141072 retrocopies
Mustela putorius furoENSMPUG000000141528 retrocopies
Mus musculus ENSMUSG000000296324 retrocopies
Oryctolagus cuniculus ENSOCUG000000293721 retrocopy
Otolemur garnettii ENSOGAG00000000358 17 retrocopies
Ochotona princeps ENSOPRG000000141863 retrocopies
Pongo abelii ENSPPYG000000177805 retrocopies
Pan troglodytes ENSPTRG0000001893419 retrocopies
Pteropus vampyrus ENSPVAG000000066605 retrocopies
Rattus norvegicus ENSRNOG000000055123 retrocopies
Sorex araneus ENSSARG000000111258 retrocopies
Sus scrofa ENSSSCG000000243136 retrocopies
Tupaia belangeri ENSTBEG0000001662916 retrocopies
Tarsius syrichta ENSTSYG0000000004115 retrocopies
Tursiops truncatus ENSTTRG000000130458 retrocopies
Vicugna pacos ENSVPAG000000100031 retrocopy



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