RetrogeneDB ID:

retro_ogar_1489

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873549.1:13412287..13412758(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL12
Ensembl ID:ENSOGAG00000000597
Aliases:None
Description:ribosomal protein L12 [Source:HGNC Symbol;Acc:10302]


Retrocopy-Parental alignment summary:






>retro_ogar_1489
CCTAAGTTTGGCCCCAACTAGATCAAAGTTGTGTCCAGTGGCAAAGTCGGTGCCATGTTCGCCCTGGCCCCCAAGGTCAG
CCCTTTGGAATTGTCTCCAAAAACAGTTGGTAATGACATTGCCAAAGCAATTGATGACTGTAAGCCTCTGAGGATTACAG
TGAAACTGACTTTCCAGAGCAGAAGGCCCAGACTGAAGCGATATCTTCTGCCTCTGTCCTCCTCATCAGTCATCAAAGGC
CTCAAGGGTCCCCTGAGACAGAAACAGAAAAACATTAAACACAACAGAAATACACTTTGGAGGAGATTGTCCTCATTGCC
AGACCCATGCAGCACCTATTTTAGTCAGAGAACTGTCAGGAACCATTAGAGAGATCCTGGGATGGCCCAGCTAGCAGGCT
ACAATGTTGATGGCTGCCACTCTCGCGGCATCATAGACGACATCAACAGAAGTTCTGTGGACTGTGCAGCT

ORF - retro_ogar_1489 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 58.68 %
Parental protein coverage: 98.18 %
Number of stop codons detected: 1
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIE
PKF.PN.IKVV......G.VGA..ALAPK..PL.LSPK.VG.DIAKA..D.K.LRITVKLT.Q.R.....
RetrocopyPKFGPN*IKVV----SSGKVGAMFALAPKVSPLELSPKTVGNDIAKAIDDCKPLRITVKLTFQSRRPRLK
Parental--VVPSASALIIKALKEPPRDRKKQKNIKHNGN-ITFDEIVNIARQMRH-RSLARELSGTIKEIL-GTAQ
....P..S...IK.LK.P...R.KQKNIKHN.N..T..EIV.IAR.M.H...L.RELSGTI.EIL.G.AQ
RetrocopyRYLLPLSSSSVIKGLKGPL--RQKQKNIKHNRN<YTLEEIVLIARPMQH<PILVRELSGTIREIL<GMAQ
ParentalSVGCNVDGRHPHDIIDDINSGAVECPA
..G.NVDG.H...IIDDIN...V.C.A
RetrocopyLAGYNVDGCHSRGIIDDINRSSVDCAA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_1489 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 26 parental genes, and 469 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG0000001671215 retrocopies
Bos taurus ENSBTAG000000069633 retrocopies
Canis familiaris ENSCAFG0000002013631 retrocopies
Callithrix jacchus ENSCJAG000000180821 retrocopy
Cavia porcellus ENSCPOG0000001376918 retrocopies
Equus caballus ENSECAG0000001062217 retrocopies
Echinops telfairi ENSETEG000000069417 retrocopies
Felis catus ENSFCAG0000001030231 retrocopies
Gorilla gorilla ENSGGOG0000000064834 retrocopies
Latimeria chalumnae ENSLACG000000153733 retrocopies
Loxodonta africana ENSLAFG0000001766910 retrocopies
Macropus eugenii ENSMEUG0000000738012 retrocopies
Myotis lucifugus ENSMLUG000000095512 retrocopies
Myotis lucifugus ENSMLUG000000134041 retrocopy
Macaca mulatta ENSMMUG000000004222 retrocopies
Monodelphis domestica ENSMODG000000045719 retrocopies
Mustela putorius furoENSMPUG0000001383234 retrocopies
Mus musculus ENSMUSG000000389001 retrocopy
Oryctolagus cuniculus ENSOCUG000000049029 retrocopies
Otolemur garnettii ENSOGAG00000000597 120 retrocopies
retro_ogar_1002, retro_ogar_1010, retro_ogar_1049, retro_ogar_1069, retro_ogar_1106, retro_ogar_1117, retro_ogar_1137, retro_ogar_1140, retro_ogar_1181, retro_ogar_1188, retro_ogar_1189, retro_ogar_1192, retro_ogar_1230, retro_ogar_1247, retro_ogar_1263, retro_ogar_1295, retro_ogar_1331, retro_ogar_1341, retro_ogar_1408, retro_ogar_1409, retro_ogar_1427, retro_ogar_1457, retro_ogar_1464, retro_ogar_1489 , retro_ogar_1503, retro_ogar_1534, retro_ogar_1536, retro_ogar_1550, retro_ogar_1569, retro_ogar_1570, retro_ogar_1579, retro_ogar_1606, retro_ogar_1621, retro_ogar_1709, retro_ogar_1717, retro_ogar_1739, retro_ogar_1789, retro_ogar_1803, retro_ogar_1810, retro_ogar_1825, retro_ogar_1836, retro_ogar_1881, retro_ogar_1885, retro_ogar_1916, retro_ogar_1923, retro_ogar_1937, retro_ogar_1941, retro_ogar_1948, retro_ogar_1969, retro_ogar_1975, retro_ogar_1987, retro_ogar_2055, retro_ogar_2115, retro_ogar_2134, retro_ogar_2172, retro_ogar_2179, retro_ogar_2180, retro_ogar_2208, retro_ogar_2209, retro_ogar_2230, retro_ogar_2291, retro_ogar_2323, retro_ogar_2387, retro_ogar_2483, retro_ogar_2495, retro_ogar_2511, retro_ogar_2570, retro_ogar_2620, retro_ogar_2622, retro_ogar_2624, retro_ogar_2749, retro_ogar_2768, retro_ogar_2809, retro_ogar_2904, retro_ogar_2935, retro_ogar_2945, retro_ogar_2953, retro_ogar_2980, retro_ogar_3004, retro_ogar_3017, retro_ogar_303, retro_ogar_3035, retro_ogar_3128, retro_ogar_3135, retro_ogar_3164, retro_ogar_3394, retro_ogar_3489, retro_ogar_395, retro_ogar_398, retro_ogar_412, retro_ogar_427, retro_ogar_452, retro_ogar_480, retro_ogar_512, retro_ogar_513, retro_ogar_538, retro_ogar_560, retro_ogar_587, retro_ogar_624, retro_ogar_636, retro_ogar_653, retro_ogar_655, retro_ogar_667, retro_ogar_668, retro_ogar_669, retro_ogar_683, retro_ogar_700, retro_ogar_734, retro_ogar_737, retro_ogar_744, retro_ogar_747, retro_ogar_775, retro_ogar_818, retro_ogar_853, retro_ogar_868, retro_ogar_901, retro_ogar_927, retro_ogar_956, retro_ogar_962, retro_ogar_964,
Ochotona princeps ENSOPRG0000001107821 retrocopies
Pongo abelii ENSPPYG0000001962244 retrocopies
Pan troglodytes ENSPTRG000000228081 retrocopy
Rattus norvegicus ENSRNOG000000162204 retrocopies
Sus scrofa ENSSSCG0000000561214 retrocopies
Tupaia belangeri ENSTBEG0000000630425 retrocopies



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