RetrogeneDB ID: | retro_hsap_1135 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 12:78524112..78524781(-) | ||
Located in intron of: | ENSG00000067798 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000257220 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM213A | ||
Ensembl ID: | ENSG00000122378 | ||
Aliases: | FAM213A, C10orf58, PAMM | ||
Description: | family with sequence similarity 213, member A [Source:HGNC Symbol;Acc:28651] |
Percent Identity: | 70.87 % |
Parental protein coverage: | 98.69 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | LQDPSFFTMGMWSIGAGALG-AAALALLLANTDVFLSKPQKAALEYLEDIDLKTLEKEPRTFKAKELW-E |
L.DP..F...MWS.GAGALG.AAALAL.LANTDVFLSKP.K..LEYLE.IDLKTLEK.P..FKAKEL..E | |
Retrocopy | LEDPRCFSVWMWSMGAGALG>AAALALMLANTDVFLSKPWKEVLEYLENIDLKTLEK*PMSFKAKELS>E |
Parental | KNGAVIMAVRRPGCFLCREE-AADLSSLKSMLDQLGVPLYAVVKEHIRTEVKDFQPYFKGEIFLDEKKKF |
KNG.VI..V..PGCFL..E..AADLSSL...LD.LG..LYAV.KE..RT..K.FQP.FK.EIFLD..KKF | |
Retrocopy | KNGVVIVSV--PGCFLWQEG<AADLSSLQPKLDKLGISLYAVIKEQVRTDIKFFQPCFKREIFLDDNKKF |
Parental | YGPQRRKMMFMGFIRLGVWYNFFR-AWNGGFSGNLEGEGFILGGVFVVGSGKQGILLEHREKEFGDKVNL |
Y..QR.KMMFMGF..LGVWYN....A.N.GF.G.LE..GFIL.GVFVVGSGKQGI..EH.EKE.GDKVN. | |
Retrocopy | YDLQRQKMMFMGFSPLGVWYNYLQ<ARNRGFPGSLESQGFILRGVFVVGSGKQGI-PEHAEKEYGDKVNS |
Parental | LSVLEAAKMIKPQTLASEKK |
LSVLEAA..IKP.TLASEKK | |
Retrocopy | LSVLEAARKIKPETLASEKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 336 .69 RPM |
bodymap2_adrenal | 0 .00 RPM | 48 .21 RPM |
bodymap2_brain | 0 .00 RPM | 130 .16 RPM |
bodymap2_breast | 0 .00 RPM | 334 .83 RPM |
bodymap2_colon | 0 .00 RPM | 102 .09 RPM |
bodymap2_heart | 0 .00 RPM | 58 .26 RPM |
bodymap2_kidney | 0 .00 RPM | 85 .37 RPM |
bodymap2_liver | 0 .00 RPM | 38 .38 RPM |
bodymap2_lung | 0 .00 RPM | 21 .66 RPM |
bodymap2_lymph_node | 0 .00 RPM | 56 .85 RPM |
bodymap2_ovary | 0 .00 RPM | 35 .18 RPM |
bodymap2_prostate | 0 .07 RPM | 82 .39 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 17 .55 RPM |
bodymap2_testis | 0 .00 RPM | 80 .45 RPM |
bodymap2_thyroid | 0 .00 RPM | 85 .66 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 4 .31 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_774 |
Gorilla gorilla | retro_ggor_886 |
Pongo abelii | retro_pabe_944 |
Macaca mulatta | retro_mmul_881 |
Callithrix jacchus | retro_cjac_3312 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000813 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000003657 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000001981 | 3 retrocopies | |
Homo sapiens | ENSG00000122378 | 2 retrocopies |
retro_hsap_1135 , retro_hsap_4076,
|
Gorilla gorilla | ENSGGOG00000013246 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000007485 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000021773 | 3 retrocopies | |
Mus musculus | ENSMUSG00000021792 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013638 | 7 retrocopies | |
Procavia capensis | ENSPCAG00000009696 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025862 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000002685 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000011140 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .04 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |