RetrogeneDB ID: | retro_ogar_2435 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873623.1:570379..570885(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM213A | ||
Ensembl ID: | ENSOGAG00000013638 | ||
Aliases: | None | ||
Description: | family with sequence similarity 213, member A [Source:HGNC Symbol;Acc:28651] |
Percent Identity: | 72.67 % |
Parental protein coverage: | 73.8 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | AAALALLLANTDVFLSKPQRAALEYLEDIDLKTLDKEPRTFKAKELWEKNGAVIMAVRRPGCFLCREEAA |
AA.LALLLAN..VFL.K.QRAALE.LE.I..KTL.KEPR.FKAKEL.EKN.AVI.A..R.G.FL..EE.. | |
Retrocopy | AAVLALLLANSEVFLIKQQRAALECLEEIYPKTLEKEPRNFKAKEL*EKNRAVIVARQRTGYFLF*EETV |
Parental | DLSSLK-PKLEELGIPLYAVVKEQIGTEVKDFQPYFKGEIFLDEKKRF-YGPQRRKMMFMGFIRLGVWYN |
.LSSLK.PKLEEL.I.L.A.V.E.I.TE.KDFQPYFKGEIF.D.KK.F.YGPQR.K.MFM.FI.LGVWYN | |
Retrocopy | VLSSLK>PKLEELVIRLSAMVREKIRTELKDFQPYFKGEIFPDVKKTF<YGPQRWKIMFMRFIHLGVWYN |
Parental | FFRAWNGGYSGNLEGEGFIL-GGVFVVGSGKQ |
F...W.GG.SGNLEGEGFIL..GVFVVGSGKQ | |
Retrocopy | FLWPWMGGCSGNLEGEGFIL<QGVFVVGSGKQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000813 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000003657 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000001981 | 3 retrocopies | |
Homo sapiens | ENSG00000122378 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000013246 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000007485 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000021773 | 3 retrocopies | |
Mus musculus | ENSMUSG00000021792 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013638 | 7 retrocopies |
retro_ogar_2126, retro_ogar_2435 , retro_ogar_2562, retro_ogar_3327, retro_ogar_420, retro_ogar_580, retro_ogar_784,
|
Procavia capensis | ENSPCAG00000009696 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025862 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000002685 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000011140 | 1 retrocopy |