RetrogeneDB ID: | retro_hsap_4076 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 8:74189596..74190281(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000254213 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM213A | ||
Ensembl ID: | ENSG00000122378 | ||
Aliases: | FAM213A, C10orf58, PAMM | ||
Description: | family with sequence similarity 213, member A [Source:HGNC Symbol;Acc:28651] |
Percent Identity: | 84.12 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MSFLQDPSFFTMGMWSIGAGALGAAALALLLANTDVFLSKPQKAALEYLEDIDLKTLEKEPRT-FKAKE- |
MSF.Q.PSF.TMGMWS.GA.ALGAAALALLLANTD.FLSKPQKAALEYLEDIDLK.LEKEPRT.F..K.. | |
Retrocopy | MSFFQNPSFLTMGMWSLGARALGAAALALLLANTDMFLSKPQKAALEYLEDIDLKMLEKEPRT<FESKAA |
Parental | LWEKNGAVIMAVRRPGCFLCREEAADLSSLKSM-LDQLGVPLYAVVKEHIRTEVKDFQPYFKGEIFLDEK |
....NG.VIMAVRRPGCFLC..EAADLSSLK.M..D.LGVPLYAVVKEHIR.EVKDFQPYFK.E.FLDEK | |
Retrocopy | MGKENGPVIMAVRRPGCFLC*GEAADLSSLKPM<VDELGVPLYAVVKEHIRNEVKDFQPYFKRETFLDEK |
Parental | KKFYGPQRRKMMFMGFIRLGVWYNFFRAWNGGFSGNLEGEGFILGGVFVVGSGKQGILLEHREKEFGDKV |
KKFYGPQR.KMMFMGFI.LGVWY..F.AWNGGFSGNLEGEGFIL..VFVV.SG.QGILLEHREKEFGDKV | |
Retrocopy | KKFYGPQRQKMMFMGFICLGVWY--F*AWNGGFSGNLEGEGFILREVFVVASGNQGILLEHREKEFGDKV |
Parental | NLLS-VLEAAKMIKPQTLASEKK |
NLL..VLEAAKMIKPQTLASEKK | |
Retrocopy | NLLCLVLEAAKMIKPQTLASEKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .12 RPM | 336 .69 RPM |
bodymap2_adrenal | 0 .00 RPM | 48 .21 RPM |
bodymap2_brain | 0 .12 RPM | 130 .16 RPM |
bodymap2_breast | 0 .04 RPM | 334 .83 RPM |
bodymap2_colon | 0 .00 RPM | 102 .09 RPM |
bodymap2_heart | 0 .00 RPM | 58 .26 RPM |
bodymap2_kidney | 0 .00 RPM | 85 .37 RPM |
bodymap2_liver | 0 .00 RPM | 38 .38 RPM |
bodymap2_lung | 0 .02 RPM | 21 .66 RPM |
bodymap2_lymph_node | 0 .00 RPM | 56 .85 RPM |
bodymap2_ovary | 0 .02 RPM | 35 .18 RPM |
bodymap2_prostate | 0 .07 RPM | 82 .39 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 17 .55 RPM |
bodymap2_testis | 0 .15 RPM | 80 .45 RPM |
bodymap2_thyroid | 0 .00 RPM | 85 .66 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 4 .31 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2763 |
Gorilla gorilla | retro_ggor_2733 |
Pongo abelii | retro_pabe_3345 |
Macaca mulatta | retro_mmul_2351 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000813 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000003657 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000001981 | 3 retrocopies | |
Homo sapiens | ENSG00000122378 | 2 retrocopies |
retro_hsap_1135, retro_hsap_4076 ,
|
Gorilla gorilla | ENSGGOG00000013246 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000007485 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000021773 | 3 retrocopies | |
Mus musculus | ENSMUSG00000021792 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013638 | 7 retrocopies | |
Procavia capensis | ENSPCAG00000009696 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025862 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000002685 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000011140 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .04 RPM |
CEU_NA11843 | 0 .03 RPM |
CEU_NA11930 | 0 .03 RPM |
CEU_NA12004 | 0 .11 RPM |
CEU_NA12400 | 0 .11 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .04 RPM |
CEU_NA12827 | 0 .14 RPM |
CEU_NA12872 | 0 .05 RPM |
CEU_NA12873 | 0 .06 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .07 RPM |
FIN_HG00315 | 0 .17 RPM |
FIN_HG00321 | 0 .09 RPM |
FIN_HG00328 | 0 .21 RPM |
FIN_HG00338 | 0 .04 RPM |
FIN_HG00349 | 0 .14 RPM |
FIN_HG00375 | 0 .07 RPM |
FIN_HG00377 | 0 .05 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .12 RPM |
GBR_HG00111 | 0 .13 RPM |
GBR_HG00114 | 0 .05 RPM |
GBR_HG00119 | 0 .12 RPM |
GBR_HG00131 | 0 .06 RPM |
GBR_HG00133 | 0 .12 RPM |
GBR_HG00134 | 0 .17 RPM |
GBR_HG00137 | 0 .08 RPM |
GBR_HG00142 | 0 .03 RPM |
GBR_HG00143 | 0 .06 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .12 RPM |
TSI_NA20518 | 0 .08 RPM |
TSI_NA20532 | 0 .07 RPM |
TSI_NA20538 | 0 .05 RPM |
TSI_NA20756 | 0 .06 RPM |
TSI_NA20765 | 0 .27 RPM |
TSI_NA20771 | 0 .03 RPM |
TSI_NA20786 | 0 .03 RPM |
TSI_NA20798 | 0 .12 RPM |
YRI_NA18870 | 0 .07 RPM |
YRI_NA18907 | 0 .10 RPM |
YRI_NA18916 | 0 .08 RPM |
YRI_NA19093 | 0 .05 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .05 RPM |
YRI_NA19118 | 0 .19 RPM |
YRI_NA19213 | 0 .02 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .14 RPM |