Parental gene:

FAM213A, ENSG00000122378

Aliases:FAM213A, C10orf58, PAMM
Description:family with sequence similarity 213, member A [Source:HGNC Symbol;Acc:28651]
Organism:Human (Homo sapiens)
Coordinates:10:82167584..82192753(+)


>ENSG00000122378
ATGTCTTTCCTCCAGGACCCAAGTTTCTTCACCATGGGGATGTGGTCCATTGGTGCAGGAGCCCTGGGGGCTGCTGCCTT
GGCATTGCTGCTTGCCAACACAGACGTGTTTCTGTCCAAGCCCCAGAAAGCGGCCCTGGAGTACCTGGAGGATATAGACC
TGAAAACACTGGAGAAGGAACCAAGGACTTTCAAAGCAAAGGAGCTATGGGAAAAAAATGGAGCTGTGATTATGGCCGTG
CGGAGGCCAGGCTGTTTCCTCTGTCGAGAGGAAGCTGCGGATCTGTCCTCCCTGAAAAGCATGTTGGACCAGCTGGGCGT
CCCCCTCTATGCAGTGGTAAAGGAGCACATCAGGACTGAAGTGAAGGATTTCCAGCCTTATTTCAAAGGAGAAATCTTCC
TGGATGAAAAGAAAAAGTTCTATGGTCCACAAAGGCGGAAGATGATGTTTATGGGATTTATCCGTCTGGGAGTGTGGTAC
AACTTCTTCCGAGCCTGGAACGGAGGCTTCTCTGGAAACCTGGAAGGAGAAGGCTTCATCCTTGGGGGAGTTTTCGTGGT
GGGATCAGGAAAGCAGGGCATTCTTCTTGAGCACCGAGAAAAAGAATTTGGAGACAAAGTAAACCTACTTTCTGTTCTGG
AAGCTGCTAAGATGATCAAACCACAGACTTTGGCCTCAGAGAAAAAATGA

Library Parental gene expression (RPM)
bodymap2_liver 38 .38 RPM
bodymap2_lung 21 .66 RPM
bodymap2_breast 334 .83 RPM
bodymap2_adipose 336 .69 RPM
bodymap2_adrenal 48 .21 RPM
bodymap2_skeletal_muscle 17 .55 RPM
bodymap2_thyroid 85 .66 RPM
bodymap2_prostate 82 .39 RPM
bodymap2_colon 102 .09 RPM
bodymap2_testis 80 .45 RPM
bodymap2_brain 130 .16 RPM
bodymap2_heart 58 .26 RPM
bodymap2_white_blood_cells 4 .31 RPM
bodymap2_lymph_node 56 .85 RPM
bodymap2_ovary 35 .18 RPM
bodymap2_kidney 85 .37 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000000813 ortholog_one2one 1 retrogene
retro_chof_878,
Callithrix jacchus ENSCJAG00000003657 ortholog_one2one 1 retrogene
retro_cjac_3312,
Dasypus novemcinctus ENSDNOG00000001981 ortholog_one2one 3 retrogenes
retro_dnov_1843, retro_dnov_1901, retro_dnov_868,
Gorilla gorilla ENSGGOG00000013246 ortholog_one2one 2 retrogenes
retro_ggor_2733, retro_ggor_886,
Microcebus murinus ENSMICG00000007485 ortholog_one2one 2 retrogenes
retro_mmur_1346, retro_mmur_1481,
Macaca mulatta ENSMMUG00000021773 ortholog_one2one 3 retrogenes
retro_mmul_2351, retro_mmul_2409, retro_mmul_881,
Mus musculus ENSMUSG00000021792 ortholog_one2one 1 retrogene
retro_mmus_2227,
Otolemur garnettii ENSOGAG00000013638 ortholog_one2one 7 retrogenes
retro_ogar_2126, retro_ogar_2435, retro_ogar_2562, retro_ogar_3327, retro_ogar_420, retro_ogar_580, retro_ogar_784,
Procavia capensis ENSPCAG00000009696 ortholog_one2one 1 retrogene
retro_pcap_281,
Pongo abelii ENSPPYG00000025862 ortholog_one2one 4 retrogenes
retro_pabe_3345, retro_pabe_643, retro_pabe_738, retro_pabe_944,
Pan troglodytes ENSPTRG00000002685 ortholog_one2one 2 retrogenes
retro_ptro_2763, retro_ptro_774,
Rattus norvegicus ENSRNOG00000011140 ortholog_one2one 1 retrogene
retro_rnor_1517,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_1135 70.87 98.69
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2. retro_hsap_4076 84.12 100.00
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Download FASTA sequences of all ENSG00000122378 retrocopies