RetrogeneDB ID: | retro_mmul_2409 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 9:70564593..70565248(+) | ||
Located in intron of: | ENSMMUG00000016902 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.10197 | ||
Ensembl ID: | ENSMMUG00000021773 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.1 % |
Parental protein coverage: | 98.65 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | LQDPSFFTMG-MWSIGAGALGAAALALLLANTDVF-LSKPQKAALEYLEDIDLKTLEKEPRTLKAKELWE |
L.DPSFF.MG.M.SIGAGALGAAALALLLANTD.F.LSKPQKAALEYL.DIDLKTLEKEPRTLKAKELWE | |
Retrocopy | LKDPSFFIMG>MRSIGAGALGAAALALLLANTDMF<LSKPQKAALEYLQDIDLKTLEKEPRTLKAKELWE |
Parental | KNGAVIMAVRRPGCFL-CREEAADLSSLKSMLDQLGVPLYAVVKEHIRTEVEDFQPYFKGEIFLDEKKKF |
KNG.VIMA.RRPGCFL.C.EE.A.LSSLK.MLD.LGVPLYAVVKEHIRTEV.DFQPY.K.EIFLDEKKKF | |
Retrocopy | KNGDVIMAMRRPGCFL<CLEEVAGLSSLKHMLDELGVPLYAVVKEHIRTEVKDFQPYVKEEIFLDEKKKF |
Parental | YGPQRRKMMFMGFIRLGVWYNFFRAWNGGFSGNLEGEGFILGGVFVVGSGKQGILLEHREKE-FGDKVNL |
YGPQR.KMMFMGFI.LGVWYNFFRAWN.GFSGNLEGEGFI...VFVV.SGKQGILL.H.EKE...D.VNL | |
Retrocopy | YGPQRQKMMFMGFIHLGVWYNFFRAWNEGFSGNLEGEGFIHPRVFVV*SGKQGILLKH*EKE<IEDTVNL |
Parental | LSVLEAAKMIKPQ |
LSVLEAAKMIKPQ | |
Retrocopy | LSVLEAAKMIKPQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 1 .90 RPM | 52 .55 RPM |
SRP007412_brain_prefrontal_cortex | 1 .75 RPM | 48 .87 RPM |
SRP007412_cerebellum | 0 .39 RPM | 10 .40 RPM |
SRP007412_heart | 1 .59 RPM | 29 .03 RPM |
SRP007412_kidney | 1 .76 RPM | 41 .90 RPM |
SRP007412_liver | 0 .44 RPM | 19 .16 RPM |
SRP007412_testis | 1 .51 RPM | 24 .27 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000813 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000003657 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000001981 | 3 retrocopies | |
Homo sapiens | ENSG00000122378 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000013246 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000007485 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000021773 | 3 retrocopies |
retro_mmul_2351, retro_mmul_2409 , retro_mmul_881,
|
Mus musculus | ENSMUSG00000021792 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013638 | 7 retrocopies | |
Procavia capensis | ENSPCAG00000009696 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025862 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000002685 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000011140 | 1 retrocopy |