RetrogeneDB ID: | retro_pabe_944 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 12:78594493..78595161(-) | ||
Located in intron of: | ENSPPYG00000004792 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM213A | ||
Ensembl ID: | ENSPPYG00000025862 | ||
Aliases: | None | ||
Description: | family with sequence similarity 213, member A [Source:HGNC Symbol;Acc:28651] |
Percent Identity: | 65.94 % |
Parental protein coverage: | 98.25 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | LQDPSFFTMGMWSIGAGALG-AAALALLLAKTDVFLSKPQKAALEYLEDIDLKTLEKEPRTLK-AKE-LW |
L.DP..F..GMW..GAGALG.AAALAL.L..TDVFLSKP.K..LEYLE.IDLKTLE..P...K..KE... | |
Retrocopy | LEDPRCFSVGMWCMGAGALG>AAALALMLPNTDVFLSKPWKEVLEYLENIDLKTLER*PMAFK<SKEAIR |
Parental | EKNGAVIMAVRRPGCFLCREEAADLSSLKSMLDQLGVPLYAVVKEHIRTEVKDFQPYFKGEIFLDEKKKF |
.KNG.VI.AV..PGCFL..E.AADLSSL...LD.LGV.LYAVV.E..RT..K.FQP.FK.EIFLD..KKF | |
Retrocopy | GKNGVVIVAV--PGCFLWQEGAADLSSLQPKLDMLGVSLYAVVNEQVRTDIKFFQPCFKREIFLDDNKKF |
Parental | YGPQRRKMMFMGFIRLGVWYNFFR-AWNGGFSGNLEGEGFILGGVFVVGSGKQGILLEHREKEFGDKVNL |
Y..QR.KM.F.GF..LG.WYN....AWN.GF.GN.E..GFIL.GVFVVGSGKQGI.L.H.EKE.GDKVN. | |
Retrocopy | YDLQRQKMTFTGFSPLGGWYNYLQ<AWNRGFLGNMESQGFILRGVFVVGSGKQGI-LQHGEKEYGDKVNS |
Parental | LSVLEAAKMIKPQTLASEK |
LSVLEAA..IKP.....EK | |
Retrocopy | LSVLEAARKIKPDFGLREK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 36 .66 RPM |
SRP007412_cerebellum | 0 .00 RPM | 8 .63 RPM |
SRP007412_heart | 0 .00 RPM | 7 .62 RPM |
SRP007412_kidney | 0 .00 RPM | 21 .48 RPM |
SRP007412_liver | 0 .00 RPM | 15 .52 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1135 |
Pan troglodytes | retro_ptro_774 |
Gorilla gorilla | retro_ggor_886 |
Macaca mulatta | retro_mmul_881 |
Callithrix jacchus | retro_cjac_3312 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000813 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000003657 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000001981 | 3 retrocopies | |
Homo sapiens | ENSG00000122378 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000013246 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000007485 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000021773 | 3 retrocopies | |
Mus musculus | ENSMUSG00000021792 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013638 | 7 retrocopies | |
Procavia capensis | ENSPCAG00000009696 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025862 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000002685 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000011140 | 1 retrocopy |