Parental gene:

FAM213A, ENSCJAG00000003657

Aliases:None
Description:family with sequence similarity 213, member A [Source:HGNC Symbol;Acc:28651]
Organism:Marmoset (Callithrix jacchus)
Coordinates:12:43967296..43990083(-)


>ENSCJAG00000003657
ATGTCTTTCCTCCAGGACCCAAGTTTCTTCACCATGGGGATGTGGTCCATCGGTGCGGGAGCCCTGGGGGCTGCTGCCTT
GGCATTGCTGTTGGCCAACACAGACGTGTTTCTGTCCAAGCCCCAGAAAGCAGCACTGGAGTACCTGGAGGATATTGACC
TGAAGACACTGGAGAACGCCTTAGAACCAAGGACTTTGAAAGCAAAGGAGCTATGGGAAAAAAATGGCGCTGTGATTATG
GCTGTGCGGAGGCCAGGCTGTTTCCTCTGTCGAGAGGAAGCTGCAGATCTGTCCTCCCTGAAACCCAAGTTGGACGAGCT
TGGCGTCCCCCTCTATGCAGTGGTAAAGGAGCACATCAAGACTGAAGTGAAGGATTTCCAGCCTTATTTCAAAGGAGAAG
TCTTCCTGGATGAAAAGAAAAAGTTCTATGGTCCACAAAGGCGGAAAATGATGTTTATGGGATTTATCCGTCTGGGAGTG
TGGTACAACTTCTTCCGAGCCTGGAATGGAGGCTTCTCTGGAAACCTGGAAGGAGAAGGCTTCGTCCTCGGAGGAGTTTT
TGTGGTAGGATCAGGAAAGCAGGGCATTCTTCTCGAGCACCGGGAAAAAGAATTTGGAGACAAAGTAAACCTACTTTCTG
TTCTGGAAGCTGCTAAGATGATCAAACCACAGACTTTGGCCTCAGAGCAAAAATGA

Library Parental gene expression (RPM)
SRP051959_colon 8 .96 RPM
SRP051959_heart 14 .15 RPM
SRP051959_kidney 65 .34 RPM
SRP051959_liver 65 .24 RPM
SRP051959_lung 7 .76 RPM
SRP051959_lymph_node 5 .14 RPM
SRP051959_skeletal_muscle 12 .82 RPM
SRP051959_spleen 13 .66 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000000813 ortholog_one2one 1 retrogene
retro_chof_878,
Dasypus novemcinctus ENSDNOG00000001981 ortholog_one2one 3 retrogenes
retro_dnov_1843, retro_dnov_1901, retro_dnov_868,
Homo sapiens ENSG00000122378 ortholog_one2one 2 retrogenes
retro_hsap_1135, retro_hsap_4076,
Gorilla gorilla ENSGGOG00000013246 ortholog_one2one 2 retrogenes
retro_ggor_2733, retro_ggor_886,
Microcebus murinus ENSMICG00000007485 ortholog_one2one 2 retrogenes
retro_mmur_1346, retro_mmur_1481,
Macaca mulatta ENSMMUG00000021773 ortholog_one2one 3 retrogenes
retro_mmul_2351, retro_mmul_2409, retro_mmul_881,
Mus musculus ENSMUSG00000021792 ortholog_one2one 1 retrogene
retro_mmus_2227,
Otolemur garnettii ENSOGAG00000013638 ortholog_one2one 7 retrogenes
retro_ogar_2126, retro_ogar_2435, retro_ogar_2562, retro_ogar_3327, retro_ogar_420, retro_ogar_580, retro_ogar_784,
Procavia capensis ENSPCAG00000009696 ortholog_one2one 1 retrogene
retro_pcap_281,
Pongo abelii ENSPPYG00000025862 ortholog_one2one 4 retrogenes
retro_pabe_3345, retro_pabe_643, retro_pabe_738, retro_pabe_944,
Pan troglodytes ENSPTRG00000002685 ortholog_one2one 2 retrogenes
retro_ptro_2763, retro_ptro_774,
Rattus norvegicus ENSRNOG00000011140 ortholog_one2one 1 retrogene
retro_rnor_1517,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3312 64.22 98.70
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Download FASTA sequences of all ENSCJAG00000003657 retrocopies