RetrogeneDB ID: | retro_hsap_863 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 11:33211660..33212049(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000241950 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL29 | ||
Ensembl ID: | ENSG00000162244 | ||
Aliases: | RPL29, HIP, HUMRPL29, L29, RPL29P10, RPL29_3_370 | ||
Description: | ribosomal protein L29 [Source:HGNC Symbol;Acc:10331] |
Percent Identity: | 67.18 % |
Parental protein coverage: | 81.76 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQANNAKAMSARAE |
MAKSKNHTTHNQS.KW.RN.IKK...QRY..L.GVDPKFLRNM.FAKKHNKKG..K..AN...AM...A. | |
Retrocopy | MAKSKNHTTHNQSQKWYRNDIKKL**QRYKPLNGVDPKFLRNMCFAKKHNKKGVNKKRANSTNAMCLYAK |
Parental | AIKALVKPKEVKPKIPKGVSRKLDRLAYIAHPKLGKRARARIAKGLR-LCRPKAKAKAKAK |
.IK.L.K.KEVK..IPK....KL..LAYIA.PKLGKRA.A.IAKGL..LC.PK.KAK...K | |
Retrocopy | SIKVLKKAKEVKSQIPKHIIQKLN*LAYIAYPKLGKRAPACIAKGLT<LCPPKTKAKSQIK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 345 .40 RPM |
bodymap2_adrenal | 0 .00 RPM | 368 .49 RPM |
bodymap2_brain | 0 .02 RPM | 44 .84 RPM |
bodymap2_breast | 0 .00 RPM | 226 .07 RPM |
bodymap2_colon | 0 .00 RPM | 351 .62 RPM |
bodymap2_heart | 0 .00 RPM | 82 .58 RPM |
bodymap2_kidney | 0 .00 RPM | 143 .27 RPM |
bodymap2_liver | 0 .00 RPM | 120 .41 RPM |
bodymap2_lung | 0 .00 RPM | 323 .61 RPM |
bodymap2_lymph_node | 0 .00 RPM | 374 .43 RPM |
bodymap2_ovary | 0 .06 RPM | 388 .74 RPM |
bodymap2_prostate | 0 .00 RPM | 379 .29 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 419 .30 RPM |
bodymap2_testis | 0 .11 RPM | 194 .98 RPM |
bodymap2_thyroid | 0 .00 RPM | 207 .95 RPM |
bodymap2_white_blood_cells | 0 .24 RPM | 354 .52 RPM |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .36 RPM |
CEU_NA11843 | 0 .45 RPM |
CEU_NA11930 | 0 .59 RPM |
CEU_NA12004 | 0 .34 RPM |
CEU_NA12400 | 0 .70 RPM |
CEU_NA12751 | 0 .27 RPM |
CEU_NA12760 | 0 .22 RPM |
CEU_NA12827 | 0 .52 RPM |
CEU_NA12872 | 0 .33 RPM |
CEU_NA12873 | 0 .22 RPM |
FIN_HG00183 | 0 .22 RPM |
FIN_HG00277 | 0 .48 RPM |
FIN_HG00315 | 0 .28 RPM |
FIN_HG00321 | 0 .36 RPM |
FIN_HG00328 | 0 .59 RPM |
FIN_HG00338 | 0 .28 RPM |
FIN_HG00349 | 0 .26 RPM |
FIN_HG00375 | 0 .42 RPM |
FIN_HG00377 | 0 .30 RPM |
FIN_HG00378 | 0 .38 RPM |
GBR_HG00099 | 0 .41 RPM |
GBR_HG00111 | 0 .24 RPM |
GBR_HG00114 | 0 .42 RPM |
GBR_HG00119 | 0 .43 RPM |
GBR_HG00131 | 0 .34 RPM |
GBR_HG00133 | 0 .12 RPM |
GBR_HG00134 | 0 .52 RPM |
GBR_HG00137 | 0 .22 RPM |
GBR_HG00142 | 0 .42 RPM |
GBR_HG00143 | 0 .29 RPM |
TSI_NA20512 | 0 .34 RPM |
TSI_NA20513 | 0 .51 RPM |
TSI_NA20518 | 0 .17 RPM |
TSI_NA20532 | 0 .31 RPM |
TSI_NA20538 | 0 .23 RPM |
TSI_NA20756 | 0 .29 RPM |
TSI_NA20765 | 0 .29 RPM |
TSI_NA20771 | 0 .34 RPM |
TSI_NA20786 | 0 .29 RPM |
TSI_NA20798 | 0 .53 RPM |
YRI_NA18870 | 0 .20 RPM |
YRI_NA18907 | 0 .17 RPM |
YRI_NA18916 | 0 .34 RPM |
YRI_NA19093 | 0 .26 RPM |
YRI_NA19099 | 0 .37 RPM |
YRI_NA19114 | 0 .45 RPM |
YRI_NA19118 | 0 .31 RPM |
YRI_NA19213 | 0 .50 RPM |
YRI_NA19214 | 0 .37 RPM |
YRI_NA19223 | 0 .16 RPM |