RetrogeneDB ID:

retro_meug_871

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:Scaffold21357:20171..20471(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:BLOC1S2
Ensembl ID:ENSMEUG00000003630
Aliases:None
Description:biogenesis of lysosomal organelles complex-1, subunit 2 [Source:HGNC Symbol;Acc:20984]


Retrocopy-Parental alignment summary:






>retro_meug_871
ACCAAGCCTGCTGAGATGGACATCATGTGGCTATGCTGTGACATATTTTGCTAAATGGCCATGTACCTGACAGGTTAAGT
GAAAGTCACCAGTGAAGACTATAAACTTCTGAAAAATATGAACAAACTGATTAGCTTGAAGTATGTAGAAATGAAAGATA
CTGCAGTAAACATAAGTAGAAACCTAAAGGATTCAAACCAGAAATATGCAATATTAATTGAGGAGCAAGTAGCAGTTCTT
GAGCAGACAGCTTACAAGTTAGATGCATATTCAAAGAAATGACAAGCAAAGTACAAAAAA

ORF - retro_meug_871 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 58.82 %
Parental protein coverage: 77.27 %
Number of stop codons detected: 3
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalTEPAEADITELCQDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAVNISRNLKDLNQKYA
T.PAE.DI..LC.D.F..MA.YLTG....TSEDYKLL.NMNKL.SLKY.EMKD.AVNISRNLKD.NQKYA
RetrocopyTKPAEMDIMWLCCDIFC*MAMYLTG*VKVTSEDYKLLKNMNKLISLKYVEMKDTAVNISRNLKDSNQKYA
ParentalALQPYLDQITLIEEQVAALEQAAYKLDAYSKK
.L.....Q....E.....L.....K..A..KK
RetrocopyIL--IEEQVAVLEQTAYKLDAYSKK*QAKYKK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_871 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_871 was not experimentally validated.

Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 5 parental genes, and 65 retrocopies.

Species Parental gene accession Retrocopies number
Echinops telfairi ENSETEG000000072991 retrocopy
Macropus eugenii ENSMEUG00000003630 57 retrocopies
Mus musculus ENSMUSG000000575062 retrocopies
Otolemur garnettii ENSOGAG000000013954 retrocopies
Tupaia belangeri ENSTBEG000000168891 retrocopy



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