RetrogeneDB ID: | retro_meug_2012 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold79248:11463..11804(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BLOC1S2 | ||
Ensembl ID: | ENSMEUG00000003630 | ||
Aliases: | None | ||
Description: | biogenesis of lysosomal organelles complex-1, subunit 2 [Source:HGNC Symbol;Acc:20984] |
Percent Identity: | 83.48 % |
Parental protein coverage: | 86.36 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | DDAVVETAEEATEP-AEADITELCQDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAVNI |
.DAVV.TAEEA.EP..E.DI..LCQD.F.K.ATYLTGELTATSED.KLLENM.KLTSLKYLEMKDIAVNI | |
Retrocopy | NDAVVGTAEEAMEP<TEVDIMGLCQDVFFKIATYLTGELTATSEDCKLLENMDKLTSLKYLEMKDIAVNI |
Parental | SRNLKDLNQKYAALQPYLDQITLIEEQVAALEQAAYKLDAYSKKL |
SRNLKDLNQKY.ALQ.YLDQITLI.EQ.AALEQA.YKLD.YSKKL | |
Retrocopy | SRNLKDLNQKYVALQSYLDQITLIDEQIAALEQASYKLDVYSKKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |