RetrogeneDB ID:

retro_mluc_1859

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429931:2446654..2446892(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:LSM6
Ensembl ID:ENSMLUG00000026355
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_1859
ATCAGTCTGTGGAAGCAATCCCCAGAGACTTCTTAAAGCAAATTATCAGACGACCAGGGATAGTAAAATTAAATTCTGAC
TGGATTATGGAAGGGTCCTGGCTTACCTGGATGGCTACATGAATATATCCTTGGAGCAGACAAAAGACTATGTGAATGGA
CAACCGAAGAGTAAGTGTGGGGATACACGTATCCGAGGAGATGAAGTGTTGCACGTAAGCACACAGAAGAGAAGGATG

ORF - retro_mluc_1859 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 68.29 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMSLRKQTPS-DFLKQIIGRPVVVKLNSG-VDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGN
.SL.KQ.P..DFLKQII.RP..VKLNS...DY..VLA.LDGYMNI.LEQT..YVNGQ.K.K.GD..IRG.
RetrocopyISLWKQSPE<DFLKQIIRRPGIVKLNSD<LDYGRVLAYLDGYMNISLEQTKDYVNGQPKSKCGDTRIRGD
ParentalNVLYISTQKRRM
.VL..STQKRRM
RetrocopyEVLHVSTQKRRM

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Myotis lucifugus was not studied using RNA-Seq expression data.
Myotis lucifugus was not studied using ChIP-Seq data.
Myotis lucifugus was not studied using EST data.
Myotis lucifugus was not studied using FANTOM5 data.
retro_mluc_1859 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 11 parental genes, and 25 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000140601 retrocopy
Cavia porcellus ENSCPOG000000153891 retrocopy
Dasypus novemcinctus ENSDNOG000000093225 retrocopies
Homo sapiens ENSG000001641672 retrocopies
Gorilla gorilla ENSGGOG000000013102 retrocopies
Myotis lucifugus ENSMLUG00000026355 1 retrocopy
retro_mluc_1859 ,
Monodelphis domestica ENSMODG000000005264 retrocopies
Nomascus leucogenys ENSNLEG000000055842 retrocopies
Otolemur garnettii ENSOGAG000000266651 retrocopy
Sus scrofa ENSSSCG000000090362 retrocopies
Tarsius syrichta ENSTSYG000000127594 retrocopies



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