RetrogeneDB ID:

retro_nleu_1479

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397295.1:7190325..7190564(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:LSM6
Ensembl ID:ENSNLEG00000005584
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_1479
ATGAGTCTTCAGAAGCAAACCTCTGGTGACTCTTAAAGCAAATCATGGGTCAGCCAACTGTTGGTAAAATTAAATTCTGC
AGTGGATTATTGAGGCGTCCTGGCTTGCCTGGATGGCTACATGAATATAGCCCTGAAGCAGGCGGAAGAATATGTAATGG
ACAACTGAAGAATAAGCATGGGGTTGCATTTAGCCACAGAAACCATGTGTTCTACATCAGTGCACAGAAGAAAAGGATG

ORF - retro_nleu_1479 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 72.29 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalMSLRKQTPSD-FLKQIIGRPVV-VKLNSGVDYRGVLACLDGYMNIALEQTEEYV-NGQLKNKYGDAFIRG
MSL.KQT..D..LKQI.G.P.V.VKLNS.VDY.GVLACLDGYMNIAL.Q.EEYV.NGQLKNK.G.AF...
RetrocopyMSLQKQTSGD<LLKQIMGQPTV>VKLNSAVDY*GVLACLDGYMNIALKQAEEYV<NGQLKNKHGVAFSHR
ParentalNNVLYISTQKRRM
N.V.YIS.QK.RM
RetrocopyNHVFYISAQKKRM

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_1479 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 12 parental genes, and 28 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000140601 retrocopy
Cavia porcellus ENSCPOG000000153891 retrocopy
Dasypus novemcinctus ENSDNOG000000093225 retrocopies
Homo sapiens ENSG000001641672 retrocopies
Gorilla gorilla ENSGGOG000000013102 retrocopies
Myotis lucifugus ENSMLUG000000263551 retrocopy
Monodelphis domestica ENSMODG000000005264 retrocopies
Nomascus leucogenys ENSNLEG00000005584 2 retrocopies
retro_nleu_1275, retro_nleu_1479 ,
Nomascus leucogenys ENSNLEG000000058353 retrocopies
Otolemur garnettii ENSOGAG000000266651 retrocopy
Sus scrofa ENSSSCG000000090362 retrocopies
Tarsius syrichta ENSTSYG000000127594 retrocopies



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