Parental gene: | LSM6, ENSDNOG00000009322 |
| Aliases: | None |
| Description: | LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:17017] |
| Organism: | Armadillo (Dasypus novemcinctus) |
| Coordinates: | scaffold_22363:38038..44294(+) |
>ENSDNOG00000009322
ATGAGTCTGCGGAAGCAAACCCCCAGTGACTTCTTAAAACAAATCATAGGACGACCAGTTGTGGTAAAATTAAATTCTGG
AGTGGATTATCGAGGGGTCCTGGCTTGCCTGGATGGCTACATGAATATAGCCCTGGAGCAGACAGAAGAATATGTAAATG
GACAACTGAAGAATAAGTATGGAGATGCATTTATCCGAGGAAACAATGTGCTGTACATAAGTACACCGAAGAGAGGGATG
TGA
ATGAGTCTGCGGAAGCAAACCCCCAGTGACTTCTTAAAACAAATCATAGGACGACCAGTTGTGGTAAAATTAAATTCTGG
AGTGGATTATCGAGGGGTCCTGGCTTGCCTGGATGGCTACATGAATATAGCCCTGGAGCAGACAGAAGAATATGTAAATG
GACAACTGAAGAATAAGTATGGAGATGCATTTATCCGAGGAAACAATGTGCTGTACATAAGTACACCGAAGAGAGGGATG
TGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012922_ascending_colon | 10 .31 RPM |
| SRP012922_cerebellum | 9 .90 RPM |
| SRP012922_heart | 6 .50 RPM |
| SRP012922_kidney | 5 .20 RPM |
| SRP012922_liver | 3 .10 RPM |
| SRP012922_lung | 7 .33 RPM |
| SRP012922_quadricep_muscle | 6 .75 RPM |
| SRP012922_spleen | 9 .96 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000014060 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000002482 | ortholog_one2one | 4 retrogenes | |
| Cavia porcellus | ENSCPOG00000015389 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000164167 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000001310 | ortholog_one2one | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000000571 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000026355 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000005524 | ortholog_one2one | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000000526 | ortholog_one2one | 4 retrogenes | |
| Mus musculus | ENSMUSG00000031683 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000005584 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000026665 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000015105 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000016488 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000009036 | ortholog_one2one | 2 retrogenes | |
| Tarsius syrichta | ENSTSYG00000012759 | ortholog_one2one | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_dnov_176 | 93.83 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_dnov_301 | 90.00 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_dnov_664 | 76.39 | 90.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_dnov_1118 | 93.75 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_dnov_2092 | 96.25 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSDNOG00000009322 retrocopies