Parental gene:

LSM6, ENSSSCG00000009036

Aliases:None
Description:LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:17017]
Organism:Pig (Sus scrofa)
Coordinates:8:87711842..87727444(-)


>ENSSSCG00000009036
ATGAGTCTGCGGAAGCAAACACCCAGTGACTTCCTAAAGCAAATCATTGGACGACCAGTAGTGGTAAAATTAAATTCTGG
AGTGGATTATCGAGGGGTCCTGGCGTGCCTGGACGGCTACATGAACATAGCCTTGGAACAGACGGAGGAGTATGTAAACG
GACAGCTGAAGAACAAGTACGGGGACGCATTTATCCGAGGAAACAATGTGTTGTACATAAGTACCCAGAAGAGGAGGATG
TAA

Library Parental gene expression (RPM)
SRP014902_placenta 2 .39 RPM
SRP014902_testis 23 .90 RPM
SRP018288_heart 15 .35 RPM
SRP018288_kidney 14 .87 RPM
SRP018288_liver 14 .23 RPM
SRP018288_lung 23 .93 RPM
SRP018856_adipose 16 .16 RPM
SRP035408_brain 13 .66 RPM
SRP035408_liver 24 .25 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000014060 ortholog_one2one 1 retrogene
retro_btau_861,
Cavia porcellus ENSCPOG00000015389 ortholog_one2one 1 retrogene
retro_cpor_368,
Dasypus novemcinctus ENSDNOG00000009322 ortholog_one2one 5 retrogenes
retro_dnov_1118, retro_dnov_176, retro_dnov_2092, retro_dnov_301, retro_dnov_664,
Homo sapiens ENSG00000164167 ortholog_one2one 2 retrogenes
retro_hsap_1948, retro_hsap_2107,
Gorilla gorilla ENSGGOG00000001310 ortholog_one2one 2 retrogenes
retro_ggor_1417, retro_ggor_1638,
Myotis lucifugus ENSMLUG00000026355 ortholog_one2one 1 retrogene
retro_mluc_1859,
Monodelphis domestica ENSMODG00000000526 ortholog_one2one 4 retrogenes
retro_mdom_1027, retro_mdom_1383, retro_mdom_1983, retro_mdom_621,
Nomascus leucogenys ENSNLEG00000005584 ortholog_one2one 2 retrogenes
retro_nleu_1275, retro_nleu_1479,
Otolemur garnettii ENSOGAG00000026665 ortholog_one2many 1 retrogene
retro_ogar_233,
Sus scrofa ENSSSCG00000000895 within_species_paralog 1 retrogene
retro_sscr_958,
Tarsius syrichta ENSTSYG00000012759 ortholog_one2one 4 retrogenes
retro_tsyr_1332, retro_tsyr_1727, retro_tsyr_340, retro_tsyr_653,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_474 78.75 100.00
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2. retro_sscr_475 78.75 100.00
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Download FASTA sequences of all ENSSSCG00000009036 retrocopies