RetrogeneDB ID:

retro_mmul_1475

Retrocopy
location
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:2:159639969..159640232(+)
Located in intron of:ENSMMUG00000023776
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:C8H8orf59
Ensembl ID:ENSMMUG00000006381
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mmul_1475
ATGGCCAAGAACAAACATAAGAGGGAAGAAGCCCAGTAATGTATTTCACATAGCCAGTTAAAAAAACTTTAGGGTTCAAA
ACAAAGCAAACCCAATTACTACTAATCTTGTAAACAATTTAAATGTTGAAAAAGTTAGCAGAGTGAATAAAGTTTTGGTA
CACATACAGAAAAAAACTTGCTCACTTCTCAAAAGGTCTTTCCCTTGAACCTCTGCAGAAACAGCTGATTCCTCAGCAGC
ATCATAAGAACAAACCAGTTAAT

ORF - retro_mmul_1475 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 65.93 %
Parental protein coverage: 89. %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMGKNK-LRGPKSRNVFHIASQKNFKAKNKAKPVTTNLKKINIMNDEKVNRVNKAFVNVQKE-LAHFSKGP
M.KNK..RG.K..NVFHIAS.KNF...NKA.P.TTNL...N..N.EKV.RVNK..V..QK..LAHFSKG.
RetrocopyMAKNK>IRGKKPSNVFHIAS*KNFRVQNKANPITTNL--VNNLNVEKVSRVNKVLVHIQKK>LAHFSKGL
ParentalSVEPLQKELIPQQRHESKPVN
S.EPLQK.LIPQQ.H..KPVN
RetrocopySLEPLQKQLIPQQHHKNKPVN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain 0 .00 RPM 3 .59 RPM
SRP007412_brain_prefrontal_cortex 0 .08 RPM 3 .33 RPM
SRP007412_cerebellum 0 .00 RPM 3 .87 RPM
SRP007412_heart 0 .06 RPM 4 .65 RPM
SRP007412_kidney 0 .00 RPM 5 .99 RPM
SRP007412_liver 0 .00 RPM 2 .22 RPM
SRP007412_testis 0 .04 RPM 4 .07 RPM
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_1475 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_1475 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_mmul_1475 has 5 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_2609
Pan troglodytes retro_ptro_1759
Gorilla gorilla retro_ggor_1828
Pongo abelii retro_pabe_2345
Callithrix jacchus retro_cjac_1556

Parental genes homology:
Parental genes homology involve 15 parental genes, and 46 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000024092 retrocopies
Bos taurus ENSBTAG000000322272 retrocopies
Callithrix jacchus ENSCJAG000000003795 retrocopies
Cavia porcellus ENSCPOG000000219655 retrocopies
Felis catus ENSFCAG000000263661 retrocopy
Homo sapiens ENSG000001767314 retrocopies
Gorilla gorilla ENSGGOG000000274644 retrocopies
Loxodonta africana ENSLAFG000000326124 retrocopies
Myotis lucifugus ENSMLUG000000061551 retrocopy
Macaca mulatta ENSMMUG00000006381 3 retrocopies
retro_mmul_1475 , retro_mmul_2490, retro_mmul_537,
Mus musculus ENSMUSG000000787843 retrocopies
Pongo abelii ENSPPYG000000299103 retrocopies
Pan troglodytes ENSPTRG000000203855 retrocopies
Rattus norvegicus ENSRNOG000000389022 retrocopies
Sus scrofa ENSSSCG000000061442 retrocopies



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