RetrogeneDB ID: | retro_rnor_496 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 1:163530535..163530815(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RGD1565641 | ||
Ensembl ID: | ENSRNOG00000038902 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.26 % |
Parental protein coverage: | 96.91 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAKNKLKGQKSRNVFHIASHKPL-KAKNKAKPVTTNLKKINIMNHEKVNRMNRAFVNIQKELANFSKSLS |
M.KNK.KGQKSR..FH..S.K.L.KAK.KAK.......KIN.MN.EKVNRMNRAF.NIQK....FS.SLS | |
Retrocopy | MPKNKYKGQKSRYIFHLSSQKYL>KAKSKAKFSLLLIFKINVMNDEKVNRMNRAFINIQKGFVSFSESLS |
Parental | LKSVQKELKHHEKEPANVDEATRLM |
LKS.QKEL..HE.EPAN....TRLM | |
Retrocopy | LKSEQKEL-CHENEPANDVKVTRLM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 3 .88 RPM |
SRP017611_kidney | 0 .00 RPM | 7 .89 RPM |
SRP017611_liver | 0 .00 RPM | 6 .59 RPM |
Species | RetrogeneDB ID |
---|---|
Mus musculus | retro_mmus_2950 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000002409 | 2 retrocopies | |
Bos taurus | ENSBTAG00000032227 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000000379 | 5 retrocopies | |
Cavia porcellus | ENSCPOG00000021965 | 5 retrocopies | |
Felis catus | ENSFCAG00000026366 | 1 retrocopy | |
Homo sapiens | ENSG00000176731 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000027464 | 4 retrocopies | |
Loxodonta africana | ENSLAFG00000032612 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000006155 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006381 | 3 retrocopies | |
Mus musculus | ENSMUSG00000078784 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000029910 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000020385 | 5 retrocopies | |
Rattus norvegicus | ENSRNOG00000038902 | 2 retrocopies |
retro_rnor_2600, retro_rnor_496 ,
|
Sus scrofa | ENSSSCG00000006144 | 2 retrocopies |