Parental gene:

1810022K09Rik, ENSMUSG00000078784

Aliases:1810022K09Rik, AI746582, AL023036
Description:RIKEN cDNA 1810022K09 gene [Source:MGI Symbol;Acc:MGI:1916376]
Organism:Mouse (Mus musculus)
Coordinates:3:14606319..14611221(-)


>ENSMUSG00000078784
ATGCTGGCTGCGGCGGCTCCGAGGGCTCTGTTCTGCCAACTTCTAGTCCTCTATCGATTCCTCGTGGGCGATCGAACTCC
CGGGGTGCCCAGGCCCGAAACCTTGCGGCCACCCCTTAGCAGGACAATGGCCAAGAACAAATTAAAAGGGCAGAAGTCCA
GGAATGTATTTCATATAGCTAGCCACAAAACTTTCAAGGCTAAAAACAAGGCAAAACCAGTTACTACTAATCTTAAGAAG
ATAAACATTATGAATCATGAAAAAGTCAACAGAATGAACAGAGCTTTTGTAAATATACAGAAAGAACTTGCAAACTTCTC
AAAAAGCCTTTCTCTTAAATCTGTGCAGAAAGAGCTGAAGCACCATGAAAATGAACCAGCTAACGTTGATGAAGCGACAC
GACTAATGGCTCAGTTGTAA

Library Parental gene expression (RPM)
SRP007412_brain 6 .28 RPM
SRP007412_cerebellum 3 .60 RPM
SRP007412_heart 2 .83 RPM
SRP007412_kidney 4 .99 RPM
SRP007412_liver 5 .16 RPM
SRP007412_testis 1 .33 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002409 ortholog_one2many 2 retrogenes
retro_amel_1005, retro_amel_1049,
Bos taurus ENSBTAG00000032227 ortholog_many2many 2 retrogenes
retro_btau_158, retro_btau_7,
Callithrix jacchus ENSCJAG00000000379 ortholog_one2many 5 retrogenes
retro_cjac_1214, retro_cjac_1556, retro_cjac_1984, retro_cjac_2448, retro_cjac_2762,
Cavia porcellus ENSCPOG00000021965 ortholog_one2many 5 retrogenes
retro_cpor_201, retro_cpor_554, retro_cpor_765, retro_cpor_841, retro_cpor_962,
Felis catus ENSFCAG00000026366 ortholog_one2many 1 retrogene
retro_fcat_450,
Homo sapiens ENSG00000176731 ortholog_many2many 4 retrogenes
retro_hsap_2609, retro_hsap_3163, retro_hsap_3606, retro_hsap_52,
Gorilla gorilla ENSGGOG00000027464 ortholog_one2many 4 retrogenes
retro_ggor_1218, retro_ggor_1353, retro_ggor_1828, retro_ggor_2433,
Loxodonta africana ENSLAFG00000032612 ortholog_one2many 4 retrogenes
retro_lafr_1083, retro_lafr_1242, retro_lafr_911, retro_lafr_944,
Myotis lucifugus ENSMLUG00000006155 ortholog_one2many 1 retrogene
retro_mluc_1272,
Macaca mulatta ENSMMUG00000006381 ortholog_one2many 3 retrogenes
retro_mmul_1475, retro_mmul_2490, retro_mmul_537,
Pongo abelii ENSPPYG00000029910 ortholog_many2many 3 retrogenes
retro_pabe_2345, retro_pabe_2630, retro_pabe_3633,
Pan troglodytes ENSPTRG00000020385 ortholog_one2many 5 retrogenes
retro_ptro_1759, retro_ptro_2275, retro_ptro_2437, retro_ptro_2982, retro_ptro_471,
Rattus norvegicus ENSRNOG00000038902 ortholog_one2many 2 retrogenes
retro_rnor_2600, retro_rnor_496,
Sus scrofa ENSSSCG00000006144 ortholog_one2many 2 retrogenes
retro_sscr_342, retro_sscr_96,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_257 100.00 69.78
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2. retro_mmus_2950 67.00 68.35
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3. retro_mmus_3313 67.71 66.91
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Download FASTA sequences of all ENSMUSG00000078784 retrocopies