RetrogeneDB ID: | retro_mmus_2950 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 7:92469246..92469530(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | 1810022K09Rik | ||
Ensembl ID: | ENSMUSG00000078784 | ||
Aliases: | 1810022K09Rik, AI746582, AL023036 | ||
Description: | RIKEN cDNA 1810022K09 gene [Source:MGI Symbol;Acc:MGI:1916376] |
Percent Identity: | 67. % |
Parental protein coverage: | 68.35 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | TMAKNKLKGQKSRNVFHIASHK-TFKAKNKAKPVTTNLKKINIMNHEK--VNRMNRAFVNIQKEL-ANFS |
TM.KNK.KGQKSRNV.HI.S.K.T.KAK.KAK.......KINI.N.....VN.MNRA.VNIQK.L...FS | |
Retrocopy | TMVKNKFKGQKSRNV-HIVSQK>TPKAKSKAKIWLLLI*KINIVNDXXXXVNGMNRAIVNIQKGL<VSFS |
Parental | KSLSL-KSVQKELKHHENEPANVDEATRLM |
..LSL.KS.QKEL..HENEPANVDEATRLM | |
Retrocopy | ENLSL<KSEQKELC-HENEPANVDEATRLM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 6 .28 RPM |
SRP007412_cerebellum | 0 .00 RPM | 3 .60 RPM |
SRP007412_heart | 0 .00 RPM | 2 .83 RPM |
SRP007412_kidney | 0 .00 RPM | 4 .99 RPM |
SRP007412_liver | 0 .00 RPM | 5 .16 RPM |
SRP007412_testis | 0 .00 RPM | 1 .33 RPM |
Species | RetrogeneDB ID |
---|---|
Rattus norvegicus | retro_rnor_496 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000002409 | 2 retrocopies | |
Bos taurus | ENSBTAG00000032227 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000000379 | 5 retrocopies | |
Cavia porcellus | ENSCPOG00000021965 | 5 retrocopies | |
Felis catus | ENSFCAG00000026366 | 1 retrocopy | |
Homo sapiens | ENSG00000176731 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000027464 | 4 retrocopies | |
Loxodonta africana | ENSLAFG00000032612 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000006155 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006381 | 3 retrocopies | |
Mus musculus | ENSMUSG00000078784 | 3 retrocopies |
retro_mmus_257, retro_mmus_2950 , retro_mmus_3313,
|
Pongo abelii | ENSPPYG00000029910 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000020385 | 5 retrocopies | |
Rattus norvegicus | ENSRNOG00000038902 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000006144 | 2 retrocopies |