RetrogeneDB ID: | retro_hsap_3163 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 5:37130530..37130792(+) | ||
Located in intron of: | ENSG00000197603 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000271378 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C8orf59 | ||
Ensembl ID: | ENSG00000176731 | ||
Aliases: | None | ||
Description: | chromosome 8 open reading frame 59 [Source:HGNC Symbol;Acc:32235] |
Percent Identity: | 73.91 % |
Parental protein coverage: | 90.82 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MAKNKLRGPKSRNVFHIASQKNF-KAKNK-AKPVTTNLKKINIMNEE-KVNRVNKAFVNVQKELAHFAKS |
MAKNKLRG.KSRNVFH..SQ.NF...K.K.AKPVTT.L.KIN.MN.E.KVN.VNKAFVN.QKEL..F.K. | |
Retrocopy | MAKNKLRGQKSRNVFHMVSQNNFIRLKTK<AKPVTTHL-KINVMNDE<KVNNVNKAFVNIQKEL-NFSKA |
Parental | ISLEPLQKELIPQQRHESKPVD |
.SLEPLQKE.IPQ.RHESKPV. | |
Retrocopy | LSLEPLQKEPIPQKRHESKPVN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 8 .95 RPM |
bodymap2_adrenal | 0 .00 RPM | 28 .84 RPM |
bodymap2_brain | 0 .09 RPM | 11 .09 RPM |
bodymap2_breast | 0 .00 RPM | 12 .78 RPM |
bodymap2_colon | 0 .00 RPM | 15 .49 RPM |
bodymap2_heart | 0 .00 RPM | 10 .17 RPM |
bodymap2_kidney | 0 .06 RPM | 12 .26 RPM |
bodymap2_liver | 0 .00 RPM | 12 .32 RPM |
bodymap2_lung | 0 .00 RPM | 12 .78 RPM |
bodymap2_lymph_node | 0 .00 RPM | 14 .73 RPM |
bodymap2_ovary | 0 .02 RPM | 17 .64 RPM |
bodymap2_prostate | 0 .00 RPM | 20 .13 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 5 .78 RPM |
bodymap2_testis | 0 .06 RPM | 11 .69 RPM |
bodymap2_thyroid | 0 .06 RPM | 16 .82 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 10 .08 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2275 |
Gorilla gorilla | retro_ggor_1353 |
Pongo abelii | retro_pabe_2630 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000002409 | 2 retrocopies | |
Bos taurus | ENSBTAG00000032227 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000000379 | 5 retrocopies | |
Cavia porcellus | ENSCPOG00000021965 | 5 retrocopies | |
Felis catus | ENSFCAG00000026366 | 1 retrocopy | |
Homo sapiens | ENSG00000176731 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000027464 | 4 retrocopies | |
Loxodonta africana | ENSLAFG00000032612 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000006155 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006381 | 3 retrocopies | |
Mus musculus | ENSMUSG00000078784 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000029910 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000020385 | 5 retrocopies | |
Rattus norvegicus | ENSRNOG00000038902 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000006144 | 2 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .02 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .04 RPM |
CEU_NA12751 | 0 .05 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .03 RPM |
CEU_NA12873 | 0 .03 RPM |
FIN_HG00183 | 0 .03 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .02 RPM |
FIN_HG00338 | 0 .02 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .02 RPM |
GBR_HG00099 | 0 .03 RPM |
GBR_HG00111 | 0 .02 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .03 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .07 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .03 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .03 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .02 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .02 RPM |
YRI_NA19223 | 0 .00 RPM |