RetrogeneDB ID: | retro_ptro_471 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 10:13500776..13501071(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPTRG00000040206 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C8orf59 | ||
Ensembl ID: | ENSPTRG00000020385 | ||
Aliases: | None | ||
Description: | chromosome 8 open reading frame 59 [Source:HGNC Symbol;Acc:32235] |
Percent Identity: | 64. % |
Parental protein coverage: | 99. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | AKNKLRGPKSRNVFHIASQKNFKAKNKAKPVTTNLKKINIMNEEKVNRVNKAFVNVQKELAHFAK-SISL |
AKNK.RG.KSRNVF.IASQK.FKAKN..KP.T.NLKKI.IMN.E........F.........F.K...SL | |
Retrocopy | AKNKFRGQKSRNVFRIASQKSFKAKNRVKPITANLKKIHIMNDES-QQSKQSFWKCTRGTSTFLK>GLSL |
Parental | EPLQKELIPQQRHESKPVNVDEATRLMALL |
..LQKELIPQQRHE.KPVNVDEAT.LMA.L | |
Retrocopy | DLLQKELIPQQRHEIKPVNVDEATKLMAQL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 9 .31 RPM |
SRP007412_cerebellum | 0 .00 RPM | 4 .80 RPM |
SRP007412_heart | 0 .00 RPM | 11 .92 RPM |
SRP007412_kidney | 0 .00 RPM | 14 .46 RPM |
SRP007412_liver | 0 .00 RPM | 9 .20 RPM |
SRP007412_testis | 0 .11 RPM | 8 .33 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_52 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000002409 | 2 retrocopies | |
Bos taurus | ENSBTAG00000032227 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000000379 | 5 retrocopies | |
Cavia porcellus | ENSCPOG00000021965 | 5 retrocopies | |
Felis catus | ENSFCAG00000026366 | 1 retrocopy | |
Homo sapiens | ENSG00000176731 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000027464 | 4 retrocopies | |
Loxodonta africana | ENSLAFG00000032612 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000006155 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006381 | 3 retrocopies | |
Mus musculus | ENSMUSG00000078784 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000029910 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000020385 | 5 retrocopies | |
Rattus norvegicus | ENSRNOG00000038902 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000006144 | 2 retrocopies |