RetrogeneDB ID: | retro_mmus_2071 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 2:104583597..104583781(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000082276 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps21 | ||
Ensembl ID: | ENSMUSG00000039001 | ||
Aliases: | Rps21, 1810049N11Rik, 2410030A14Rik | ||
Description: | ribosomal protein S21 [Source:MGI Symbol;Acc:MGI:1913731] |
Percent Identity: | 66.13 % |
Parental protein coverage: | 73.49 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SASNRIIAAKDHASIQMNVAEVDRTTGRFNGQFKTYGICGAIR-RMGESDDSILRLAKADGI |
...N..I.AKDHASI..NVA..D..TGRF.GQ.KTY.ICG.I...MGE.DDS.LRLAKADGI | |
Retrocopy | ASANHTIGAKDHASI*RNVAKTDNVTGRFDGQIKTYAICGTIL>QMGELDDSSLRLAKADGI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 91 .23 RPM |
SRP007412_cerebellum | 0 .00 RPM | 56 .40 RPM |
SRP007412_heart | 0 .00 RPM | 82 .68 RPM |
SRP007412_kidney | 0 .00 RPM | 73 .67 RPM |
SRP007412_liver | 0 .00 RPM | 64 .53 RPM |
SRP007412_testis | 0 .00 RPM | 35 .77 RPM |