Parental gene: | RPS21, ENSG00000171858 |
| Aliases: | RPS21, HLDF, S21 |
| Description: | ribosomal protein S21 [Source:HGNC Symbol;Acc:10409] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 20:60962171..60963576(+) |
>ENSG00000171858
ATGCAGAACGACGCCGGCGAGTTCGTGGACCTGTACGTGCCGCGGAAATGCTCCGCTAGCAATCGCATCATCGGTGCCAA
GGACCACGCATCCATCCAGATGAACGTGGCCGAGGTTGACAAGGTCACAGGCAGGTTTAATGGCCAGTTTAAAACTTATG
CTATCTGCGGGGCCATTCGTAGGATGGGTGAGTCAGATGATTCCATTCTCCGATTGGCCAAGGCCGATGGCATCGTCTCA
AAGAACTTTTGA
ATGCAGAACGACGCCGGCGAGTTCGTGGACCTGTACGTGCCGCGGAAATGCTCCGCTAGCAATCGCATCATCGGTGCCAA
GGACCACGCATCCATCCAGATGAACGTGGCCGAGGTTGACAAGGTCACAGGCAGGTTTAATGGCCAGTTTAAAACTTATG
CTATCTGCGGGGCCATTCGTAGGATGGGTGAGTCAGATGATTCCATTCTCCGATTGGCCAAGGCCGATGGCATCGTCTCA
AAGAACTTTTGA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 83 .75 RPM |
| bodymap2_lung | 279 .38 RPM |
| bodymap2_breast | 106 .71 RPM |
| bodymap2_adipose | 128 .53 RPM |
| bodymap2_adrenal | 194 .85 RPM |
| bodymap2_skeletal_muscle | 240 .23 RPM |
| bodymap2_thyroid | 118 .51 RPM |
| bodymap2_prostate | 320 .49 RPM |
| bodymap2_colon | 138 .21 RPM |
| bodymap2_testis | 113 .29 RPM |
| bodymap2_brain | 40 .65 RPM |
| bodymap2_heart | 58 .52 RPM |
| bodymap2_white_blood_cells | 338 .08 RPM |
| bodymap2_lymph_node | 323 .61 RPM |
| bodymap2_ovary | 177 .12 RPM |
| bodymap2_kidney | 78 .69 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000017399 | possible_ortholog | 2 retrogenes | |
| Bos taurus | ENSBTAG00000020795 | ortholog_one2one | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000012676 | possible_ortholog | 4 retrogenes | |
| Callithrix jacchus | ENSCJAG00000014195 | ortholog_one2many | 5 retrogenes | |
| Gorilla gorilla | ENSGGOG00000023745 | possible_ortholog | 7 retrogenes | |
| Latimeria chalumnae | ENSLACG00000012753 | ortholog_one2many | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000016769 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000039001 | ortholog_one2one | 11 retrogenes | |
| Ornithorhynchus anatinus | ENSOANG00000003361 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000016673 | ortholog_one2one | 12 retrogenes | |
| Pongo abelii | ENSPPYG00000011205 | possible_ortholog | 8 retrogenes | |
| Pan troglodytes | ENSPTRG00000013708 | ortholog_one2many | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000006325 | ortholog_one2many | 2 retrogenes | |
| Sus scrofa | ENSSSCG00000021825 | possible_ortholog | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000001029 | possible_ortholog | 5 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_1179 | 65.15 | 80.25 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_1883 | 72.73 | 66.27 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_hsap_2300 | 73.81 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_hsap_2949 | 71.95 | 98.80 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_hsap_3026 | 94.92 | 72.84 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_hsap_4303 | 75.32 | 92.77 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000171858 retrocopies