RetrogeneDB ID:

retro_ogar_3256

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873757.1:584868..585116(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS21
Ensembl ID:ENSOGAG00000016673
Aliases:None
Description:ribosomal protein S21 [Source:HGNC Symbol;Acc:10409]


Retrocopy-Parental alignment summary:






>retro_ogar_3256
ATGCAGAACAATGCTGGAGAGTTTGTGGACCTATACGTGCTGCAGAAATGCTCTGCCAGCAACCGCATAATCAGTGCTAA
GGACCACCATCCATCCAGATGAACGTGGCTGAGGTTGACAAGGTTACCAGTAGATTTAATGGCCAGTTTAAAACCTATGC
TATCTGAGGGGCCATTAGCAGGATGGGTGAATCAGATGATTCCATTCTTCAAGTGACCAAGGCTGATGGCATCATTTCAA
AGAATTTC

ORF - retro_ogar_3256 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 84.52 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMQNDAGEFVDLYVPRKCSASNRIIGAKDH-ASIQMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSI
MQN.AGEFVDLYV..KCSASNRII.AKDH..SIQMNVAEVDKVT.RFNGQFKTYAI.GAI.RMGESDDSI
RetrocopyMQNNAGEFVDLYVLQKCSASNRIISAKDH<PSIQMNVAEVDKVTSRFNGQFKTYAI*GAISRMGESDDSI
ParentalLRLAKADGIVSKNF
L...KADGI.SKNF
RetrocopyLQVTKADGIISKNF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_3256 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 16 parental genes, and 70 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000173992 retrocopies
Bos taurus ENSBTAG000000207952 retrocopies
Canis familiaris ENSCAFG000000126764 retrocopies
Callithrix jacchus ENSCJAG000000141955 retrocopies
Homo sapiens ENSG000001718586 retrocopies
Gorilla gorilla ENSGGOG000000237457 retrocopies
Latimeria chalumnae ENSLACG000000127531 retrocopy
Monodelphis domestica ENSMODG000000167691 retrocopy
Mus musculus ENSMUSG0000003900111 retrocopies
Ornithorhynchus anatinus ENSOANG000000033612 retrocopies
Otolemur garnettii ENSOGAG00000016673 12 retrocopies
Pongo abelii ENSPPYG000000112058 retrocopies
Pan troglodytes ENSPTRG000000137081 retrocopy
Rattus norvegicus ENSRNOG000000063252 retrocopies
Sus scrofa ENSSSCG000000218251 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000010295 retrocopies



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