RetrogeneDB ID: | retro_mmus_1100 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 13:53966358..53966534(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps21 | ||
Ensembl ID: | ENSMUSG00000039001 | ||
Aliases: | Rps21, 1810049N11Rik, 2410030A14Rik | ||
Description: | ribosomal protein S21 [Source:MGI Symbol;Acc:MGI:1913731] |
Percent Identity: | 57.14 % |
Parental protein coverage: | 74.7 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | CSASNRIIAAKDHASIQMNVAEVDRT-TGRFNGQFKTYGICGAIRRMGESDDSILRLAKADGI |
CS....I...KDHASIQMNVAE..R...GR..GQF....ICGAI.RM..S.D.I..LAK.DG. | |
Retrocopy | CSVITHIVSTKDHASIQMNVAELARS<KGRLIGQFI---ICGAIGRMDKSNDPIFLLAKDDGL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 91 .23 RPM |
SRP007412_cerebellum | 0 .04 RPM | 56 .40 RPM |
SRP007412_heart | 0 .00 RPM | 82 .68 RPM |
SRP007412_kidney | 0 .00 RPM | 73 .67 RPM |
SRP007412_liver | 0 .00 RPM | 64 .53 RPM |
SRP007412_testis | 0 .05 RPM | 35 .77 RPM |