RetrogeneDB ID: | retro_mmus_1818 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 19:22260118..22260459(+) | ||
Located in intron of: | ENSMUSG00000052387 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ube2d3 | ||
Ensembl ID: | ENSMUSG00000078578 | ||
Aliases: | Ube2d3, 1100001F19Rik, 9430029A22Rik, AA414951 | ||
Description: | ubiquitin-conjugating enzyme E2D 3 [Source:MGI Symbol;Acc:MGI:1913355] |
Percent Identity: | 62.39 % |
Parental protein coverage: | 76.87 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFF-LTIHFPTDY-PFKPP-KV |
..LK.I.K.LSD.....P.QCS.G....DMFH.QATI.GP..SPYQGGVFF.L.I.FPTDY.PF...... | |
Retrocopy | LVLKLIKKGLSDFSCGLPFQCSVGSIEGDMFHQQATIVGPDFSPYQGGVFF>LSIYFPTDY<PFQTT*GY |
Parental | AFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDP |
.....IYH..INSNGSICLDILRSQ..SP...I.KVLLSI.SLLCDP | |
Retrocopy | IYNKKIYHRSINSNGSICLDILRSQ<MSPD*SICKVLLSIYSLLCDP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 96 .68 RPM |
SRP007412_cerebellum | 0 .00 RPM | 65 .26 RPM |
SRP007412_heart | 0 .00 RPM | 135 .32 RPM |
SRP007412_kidney | 0 .00 RPM | 106 .26 RPM |
SRP007412_liver | 0 .00 RPM | 106 .78 RPM |
SRP007412_testis | 0 .00 RPM | 71 .76 RPM |
Species | RetrogeneDB ID |
---|---|
Rattus norvegicus | retro_rnor_539 |