RetrogeneDB ID: | retro_ocun_1271 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 5:30298817..30299077(-) | ||
Located in intron of: | ENSOCUG00000015563 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS12 | ||
Ensembl ID: | ENSOCUG00000001606 | ||
Aliases: | None | ||
Description: | ribosomal protein S12 [Source:HGNC Symbol;Acc:10385] |
Percent Identity: | 59.09 % |
Parental protein coverage: | 65.91 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | QAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNK-KLGEWVGLCKIDREGKPRKVVGCSCVVVKDY |
...LC.LAS.C.EPM.VKLVEAL..EHQI.LIKVDDNK...G.....C....EGKP.KV...SC..V.DY | |
Retrocopy | KTYLCLLASICYEPMWVKLVEALSVEHQIDLIKVDDNK<ETGAKGVACVKMTEGKPDKVDRHSCLLVEDY |
Parental | GKESQAKDVIEEYFKCKK |
...SQA..VI..YFKCKK | |
Retrocopy | SRKSQAQNVIKVYFKCKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .17 RPM | 110 .10 RPM |
SRP017611_kidney | 0 .10 RPM | 373 .70 RPM |
SRP017611_liver | 0 .15 RPM | 53 .26 RPM |