RetrogeneDB - Parental gene ENSDNOG00000006214 details

							
>ENSDNOG00000006214
ATGGCCGAGGAAGGCATTGTTGCTGGAGGTGTAATGGACGTCAACACTGCATTACAAGAGGTGCTAAAAACTGCCCTCAT

CCACGATGGCCTAGCACGTGGGATCCGCGAAGCTGCCAAAGCCTTAGACAAGCGCCAAGCCCATCTTTGTGTGCTTGCCT

CCAACTGTGATGAACCCATGTATGTCAAGCTGGTGGAGGCCCTTTGTGCTGAGCACCAAATCAACCTAATTAAGGTTGAT

GACAACAAGAAACTAGGCGAATGGGTAGGCCTCTGTAAAATCGACAGAGAGGGCAAACCCCGAAAAGTAGTTGGCTGCAG

TTGTGTGGTTGTTAAGGATTATGGCAAAGAATCTCAGGCCAAGGATGTCATCGAAGAATATTTTAAATGCAAGAAATGA

Library	Parental gene expression (RPM)
SRP012922_ascending_colon	459 .72 RPM
SRP012922_cerebellum	187 .65 RPM
SRP012922_heart	177 .27 RPM
SRP012922_kidney	489 .27 RPM
SRP012922_liver	206 .82 RPM
SRP012922_lung	592 .11 RPM
SRP012922_quadricep_muscle	224 .66 RPM
SRP012922_spleen	856 .74 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Anolis carolinensis	ENSACAG00000010479	ortholog_one2one	1 retrogene	retro_acar_102,
Ailuropoda melanoleuca	ENSAMEG00000008015	possible_ortholog	2 retrogenes	retro_amel_79, retro_amel_92,
Bos taurus	ENSBTAG00000001360	ortholog_one2one	7 retrogenes	retro_btau_106, retro_btau_1097, retro_btau_1306, retro_btau_1495, retro_btau_1514, retro_btau_1630, retro_btau_1802,
Callithrix jacchus	ENSCJAG00000002865	possible_ortholog	34 retrogenes	retro_cjac_1038, retro_cjac_1044, retro_cjac_1205, retro_cjac_1291, retro_cjac_1528, retro_cjac_1602, retro_cjac_1778, retro_cjac_1994, retro_cjac_2039, retro_cjac_2058, retro_cjac_2065, retro_cjac_2101, retro_cjac_2112, retro_cjac_2155, retro_cjac_2337, retro_cjac_2406, retro_cjac_2421, retro_cjac_2461, retro_cjac_2681, retro_cjac_2694, retro_cjac_2858, retro_cjac_301, retro_cjac_3310, retro_cjac_4149, retro_cjac_427, retro_cjac_466, retro_cjac_494, retro_cjac_592, retro_cjac_773, retro_cjac_805, retro_cjac_806, retro_cjac_807, retro_cjac_836, retro_cjac_977,
Cavia porcellus	ENSCPOG00000000429	ortholog_one2one	4 retrogenes	retro_cpor_1096, retro_cpor_304, retro_cpor_32, retro_cpor_380,
Equus caballus	ENSECAG00000001599	ortholog_one2one	8 retrogenes	retro_ecab_1012, retro_ecab_1131, retro_ecab_133, retro_ecab_744, retro_ecab_80, retro_ecab_828, retro_ecab_875, retro_ecab_959,
Echinops telfairi	ENSETEG00000006854	ortholog_one2one	14 retrogenes	retro_etel_1129, retro_etel_1512, retro_etel_1580, retro_etel_2016, retro_etel_205, retro_etel_2082, retro_etel_2099, retro_etel_2169, retro_etel_26, retro_etel_280, retro_etel_29, retro_etel_55, retro_etel_578, retro_etel_915,
Felis catus	ENSFCAG00000028402	possible_ortholog	7 retrogenes	retro_fcat_1084, retro_fcat_1314, retro_fcat_1446, retro_fcat_1880, retro_fcat_537, retro_fcat_664, retro_fcat_796,
Gorilla gorilla	ENSGGOG00000012234	ortholog_one2one	22 retrogenes	retro_ggor_1164, retro_ggor_1287, retro_ggor_1322, retro_ggor_139, retro_ggor_1426, retro_ggor_1441, retro_ggor_1686, retro_ggor_1861, retro_ggor_1894, retro_ggor_2115, retro_ggor_2241, retro_ggor_2261, retro_ggor_2339, retro_ggor_2456, retro_ggor_2489, retro_ggor_2680, retro_ggor_3076, retro_ggor_530, retro_ggor_595, retro_ggor_673, retro_ggor_724, retro_ggor_971,
Gadus morhua	ENSGMOG00000019455	ortholog_one2one	1 retrogene	retro_gmor_11,
Loxodonta africana	ENSLAFG00000007933	ortholog_one2one	11 retrogenes	retro_lafr_1172, retro_lafr_154, retro_lafr_281, retro_lafr_429, retro_lafr_447, retro_lafr_494, retro_lafr_552, retro_lafr_653, retro_lafr_736, retro_lafr_807, retro_lafr_949,
Microcebus murinus	ENSMICG00000005252	possible_ortholog	5 retrogenes	retro_mmur_1260, retro_mmur_1527, retro_mmur_391, retro_mmur_491, retro_mmur_98,
Myotis lucifugus	ENSMLUG00000001137	possible_ortholog	5 retrogenes	retro_mluc_1479, retro_mluc_1552, retro_mluc_1987, retro_mluc_1988, retro_mluc_582,
Macaca mulatta	ENSMMUG00000013237	possible_ortholog	1 retrogene	retro_mmul_12,
Mustela putorius furo	ENSMPUG00000014771	ortholog_one2one	1 retrogene	retro_mputfur_6,
Mus musculus	ENSMUSG00000061983	possible_ortholog	1 retrogene	retro_mmus_36,
Nomascus leucogenys	ENSNLEG00000014611	possible_ortholog	4 retrogenes	retro_nleu_2717, retro_nleu_543, retro_nleu_588, retro_nleu_86,
Oryctolagus cuniculus	ENSOCUG00000001606	ortholog_one2one	14 retrogenes	retro_ocun_1025, retro_ocun_1152, retro_ocun_1271, retro_ocun_1314, retro_ocun_1707, retro_ocun_1875, retro_ocun_1948, retro_ocun_434, retro_ocun_484, retro_ocun_577, retro_ocun_590, retro_ocun_764, retro_ocun_878, retro_ocun_998,
Otolemur garnettii	ENSOGAG00000001309	ortholog_one2one	20 retrogenes	retro_ogar_1173, retro_ogar_1390, retro_ogar_2079, retro_ogar_2082, retro_ogar_2242, retro_ogar_2255, retro_ogar_2417, retro_ogar_2632, retro_ogar_2761, retro_ogar_297, retro_ogar_298, retro_ogar_3173, retro_ogar_3290, retro_ogar_3476, retro_ogar_432, retro_ogar_708, retro_ogar_754, retro_ogar_832, retro_ogar_909, retro_ogar_950,
Pelodiscus sinensis	ENSPSIG00000003457	ortholog_one2one	1 retrogene	retro_psin_52,
Pan troglodytes	ENSPTRG00000018618	ortholog_one2one	25 retrogenes	retro_ptro_1031, retro_ptro_1203, retro_ptro_1221, retro_ptro_1222, retro_ptro_1310, retro_ptro_1330, retro_ptro_1592, retro_ptro_1604, retro_ptro_1797, retro_ptro_1839, retro_ptro_1995, retro_ptro_2077, retro_ptro_2139, retro_ptro_2197, retro_ptro_2328, retro_ptro_2350, retro_ptro_2465, retro_ptro_2495, retro_ptro_2711, retro_ptro_2807, retro_ptro_2943, retro_ptro_480, retro_ptro_503, retro_ptro_618, retro_ptro_854,
Pteropus vampyrus	ENSPVAG00000017201	ortholog_one2one	12 retrogenes	retro_pvam_1081, retro_pvam_1291, retro_pvam_164, retro_pvam_258, retro_pvam_260, retro_pvam_265, retro_pvam_271, retro_pvam_316, retro_pvam_553, retro_pvam_657, retro_pvam_818, retro_pvam_884,
Rattus norvegicus	ENSRNOG00000016411	ortholog_one2one	5 retrogenes	retro_rnor_177, retro_rnor_186, retro_rnor_241, retro_rnor_295, retro_rnor_300,
Sorex araneus	ENSSARG00000003170	possible_ortholog	2 retrogenes	retro_sara_356, retro_sara_8,
Sarcophilus harrisii	ENSSHAG00000008905	possible_ortholog	6 retrogenes	retro_shar_187, retro_shar_226, retro_shar_475, retro_shar_492, retro_shar_621, retro_shar_671,
Tarsius syrichta	ENSTSYG00000010097	possible_ortholog	24 retrogenes	retro_tsyr_1010, retro_tsyr_102, retro_tsyr_1123, retro_tsyr_1188, retro_tsyr_129, retro_tsyr_1313, retro_tsyr_1345, retro_tsyr_1398, retro_tsyr_1486, retro_tsyr_1668, retro_tsyr_1955, retro_tsyr_1993, retro_tsyr_205, retro_tsyr_249, retro_tsyr_303, retro_tsyr_419, retro_tsyr_453, retro_tsyr_556, retro_tsyr_645, retro_tsyr_733, retro_tsyr_764, retro_tsyr_801, retro_tsyr_970, retro_tsyr_99,
Vicugna pacos	ENSVPAG00000011504	possible_ortholog	3 retrogenes	retro_vpac_133, retro_vpac_267, retro_vpac_339,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_dnov_57	73.58	79.55	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_dnov_328	87.88	100.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_dnov_391	85.71	100.00	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_dnov_427	85.71	53.03	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_dnov_562	80.00	52.27	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_dnov_659	65.91	100.00	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_dnov_700	82.69	78.79	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_dnov_963	68.29	60.61	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_dnov_1006	67.94	98.48	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_dnov_1116	84.16	75.76	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_dnov_1262	83.62	87.88	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_dnov_1455	79.39	98.48	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_dnov_1456	78.95	100.00	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_dnov_1642	62.96	61.36	Please wait, loading	Please wait, loading	Please wait, loading
15.	retro_dnov_1644	93.23	100.00	Please wait, loading	Please wait, loading	Please wait, loading
16.	retro_dnov_1797	85.51	51.52	Please wait, loading	Please wait, loading	Please wait, loading
17.	retro_dnov_1879	76.87	100.00	Please wait, loading	Please wait, loading	Please wait, loading
18.	retro_dnov_1939	60.74	99.24	Please wait, loading	Please wait, loading	Please wait, loading
19.	retro_dnov_1999	91.57	62.88	Please wait, loading	Please wait, loading	Please wait, loading
20.	retro_dnov_2112	63.95	64.39	Please wait, loading	Please wait, loading	Please wait, loading
21.	retro_dnov_2120	71.43	99.24	Please wait, loading	Please wait, loading	Please wait, loading
22.	retro_dnov_2263	88.39	84.09	Please wait, loading	Please wait, loading	Please wait, loading
23.	retro_dnov_2312	93.41	68.94	Please wait, loading	Please wait, loading	Please wait, loading
24.	retro_dnov_2440	89.23	98.48	Please wait, loading	Please wait, loading	Please wait, loading
25.	retro_dnov_2446	90.00	97.73	Please wait, loading	Please wait, loading	Please wait, loading
26.	retro_dnov_2472	72.73	63.64	Please wait, loading	Please wait, loading	Please wait, loading
27.	retro_dnov_2481	79.65	84.09	Please wait, loading	Please wait, loading	Please wait, loading
28.	retro_dnov_2486	88.64	100.00	Please wait, loading	Please wait, loading	Please wait, loading
29.	retro_dnov_2517	90.15	100.00	Please wait, loading	Please wait, loading	Please wait, loading
30.	retro_dnov_2584	68.61	100.00	Please wait, loading	Please wait, loading	Please wait, loading
31.	retro_dnov_2645	61.54	67.42	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSDNOG00000006214 retrocopies

Parental gene:	RPS12, ENSDNOG00000006214
Aliases:	None
Description:	ribosomal protein S12 [Source:HGNC Symbol;Acc:10385]
Organism:	*Armadillo (Dasypus novemcinctus)*
Coordinates:	GeneScaffold_1887:2874..8899(+)

Parental gene:

RPS12, ENSDNOG00000006214