Parental gene:

RPS12, ENSOCUG00000001606

Aliases:None
Description:ribosomal protein S12 [Source:HGNC Symbol;Acc:10385]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:12:123074999..123078772(+)


>ENSOCUG00000001606
ATGGCCGAGGAAGGCATTGCTGCTGGAGGTGTAATGGACGTTAACACTGCTCTACAAGAGGTGCTGAAGACCGCCCTCAT
CCATGATGGCCTAGCCCGTGGAATCCGTGAAGCTGCCAAAGCCTTAGACAAGCGCCAAGCCCATCTTTGTGTGCTTGCAT
CTAACTGCGATGAGCCTATGTATGTCAAGCTGGTGGAGGCCCTGTGTGCTGAGCACCAAATCAACCTCATTAAGGTTGAT
GACAACAAGAAACTTGGGGAATGGGTAGGCCTCTGTAAAATTGACCGAGAAGGGAAACCCCGCAAAGTGGTTGGTTGCAG
TTGCGTAGTGGTTAAGGACTACGGCAAAGAATCTCAGGCCAAGGATGTCATCGAAGAATACTTCAAATGCAAGAAATGA

Library Parental gene expression (RPM)
SRP017611_liver 53 .26 RPM
SRP017611_kidney 373 .70 RPM
SRP017611_brain 110 .10 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000010479 ortholog_one2one 1 retrogene
Ailuropoda melanoleuca ENSAMEG00000008015 possible_ortholog 2 retrogenes
Bos taurus ENSBTAG00000001360 ortholog_one2one 7 retrogenes
Callithrix jacchus ENSCJAG00000002865 possible_ortholog 34 retrogenes
Cavia porcellus ENSCPOG00000000429 ortholog_one2one 4 retrogenes
Dasypus novemcinctus ENSDNOG00000006214 ortholog_one2one 31 retrogenes
Equus caballus ENSECAG00000001599 ortholog_one2one 8 retrogenes
Echinops telfairi ENSETEG00000006854 ortholog_one2one 14 retrogenes
Felis catus ENSFCAG00000028402 possible_ortholog 7 retrogenes
Gorilla gorilla ENSGGOG00000012234 ortholog_one2one 22 retrogenes
Gadus morhua ENSGMOG00000019455 ortholog_one2one 1 retrogene
Loxodonta africana ENSLAFG00000007933 ortholog_one2one 11 retrogenes
Microcebus murinus ENSMICG00000005252 possible_ortholog 5 retrogenes
Myotis lucifugus ENSMLUG00000001137 possible_ortholog 5 retrogenes
Macaca mulatta ENSMMUG00000013237 possible_ortholog 1 retrogene
Mustela putorius furo ENSMPUG00000014771 ortholog_one2one 1 retrogene
Mus musculus ENSMUSG00000061983 possible_ortholog 1 retrogene
Nomascus leucogenys ENSNLEG00000014611 possible_ortholog 4 retrogenes
Otolemur garnettii ENSOGAG00000001309 ortholog_one2one 20 retrogenes
Pelodiscus sinensis ENSPSIG00000003457 ortholog_one2one 1 retrogene
Pan troglodytes ENSPTRG00000018618 ortholog_one2one 25 retrogenes
Pteropus vampyrus ENSPVAG00000017201 ortholog_one2one 12 retrogenes
Rattus norvegicus ENSRNOG00000016411 ortholog_one2one 5 retrogenes
Sorex araneus ENSSARG00000003170 possible_ortholog 2 retrogenes
Sarcophilus harrisii ENSSHAG00000008905 possible_ortholog 6 retrogenes
Tarsius syrichta ENSTSYG00000010097 possible_ortholog 24 retrogenes
Vicugna pacos ENSVPAG00000011504 possible_ortholog 3 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_434 90.52 87.88
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2. retro_ocun_484 56.72 100.00
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3. retro_ocun_577 87.88 100.00
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4. retro_ocun_590 98.48 100.00
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5. retro_ocun_764 56.76 82.58
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6. retro_ocun_878 77.92 58.33
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7. retro_ocun_998 78.36 100.00
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8. retro_ocun_1025 78.90 82.58
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9. retro_ocun_1152 87.93 86.36
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10. retro_ocun_1271 59.09 65.91
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11. retro_ocun_1314 71.25 58.33
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12. retro_ocun_1707 60.27 53.79
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13. retro_ocun_1875 74.05 98.48
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14. retro_ocun_1948 77.19 86.36
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Download FASTA sequences of all ENSOCUG00000001606 retrocopies