RetrogeneDB ID: | retro_ocun_1321 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 7:112379237..112379514(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL42 | ||
Ensembl ID: | ENSOCUG00000010928 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein L42 [Source:HGNC Symbol;Acc:14493] |
Percent Identity: | 60.82 % |
Parental protein coverage: | 66.2 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAAAVMKWVISKRTILKHLSPVQNGALYCVCHKSTYS-PLPDDYNCKVELALTSDGRTIVCY-HPSVDIP |
M..AV.KWV.SK.T...HL.P.QN.AL.CVCHKS....P.P.D..CK..LALTSDGRTIVC...PSVD.P | |
Retrocopy | MTTAVVKWVASKQTVFNHLFPIQNAALKCVCHKSMAN<PVPGDHDCKAGLALTSDGRTIVCR<LPSVDLP |
Parental | YEHTKPIPRPDPVLNNEETHDQV-LKT |
.E...P.P...P.L.NEETH.QV.LKT | |
Retrocopy | NE--QPTP*SGPMLHNEETHNQVCLKT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 9 .71 RPM |
SRP017611_kidney | 0 .00 RPM | 24 .12 RPM |
SRP017611_liver | 0 .00 RPM | 5 .78 RPM |