Parental gene:

MRPL42, ENSCJAG00000032825

Aliases:None
Description:mitochondrial ribosomal protein L42 [Source:HGNC Symbol;Acc:14493]
Organism:Marmoset (Callithrix jacchus)
Coordinates:9:83438006..83487040(+)


>ENSCJAG00000032825
ATGGGTGATGTCAAAGAAAACTATCTTGAAACATTTATTTCCAATCCAAAGTTTGGGATTTTTACAGATGGAGCTTTATA
TTGTGTTTGTCATAAATCTACATATTCTCCTCTACCAGATGACTATAATTGCAAAGTAGAGCTTGCTCTGACTTCTGATG
GCAGGACAATAGTATGCTACCACCCTTCTGTGGACATTCCATATGAACACACAAAACCTATCCCTCGGCCAGATCCTGTG
CATAATAATGAAGAAACACATGATCAAATCCTAAAAACCAGATTGGAAGAAAAAGTTGAACCCCTTGAACAAGGACCTAT
GATAGAACAACTTAGCAAAATGTTCTTTACTACTAAGCACCGCTGGTATCCTTATGGACGGTATCACAGATGTCGTAAGA
ATCCGAATCCTCCAAAAGACAGATGA

Library Parental gene expression (RPM)
SRP051959_colon 15 .38 RPM
SRP051959_heart 24 .29 RPM
SRP051959_kidney 17 .02 RPM
SRP051959_liver 16 .92 RPM
SRP051959_lung 14 .79 RPM
SRP051959_lymph_node 10 .82 RPM
SRP051959_skeletal_muscle 28 .52 RPM
SRP051959_spleen 13 .95 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009832 ortholog_one2one 1 retrogene
retro_amel_403,
Bos taurus ENSBTAG00000002708 ortholog_one2one 3 retrogenes
retro_btau_1395, retro_btau_346, retro_btau_775,
Homo sapiens ENSG00000198015 ortholog_one2one 3 retrogenes
retro_hsap_3427, retro_hsap_3528, retro_hsap_3844,
Gorilla gorilla ENSGGOG00000022760 ortholog_one2one 5 retrogenes
retro_ggor_1983, retro_ggor_2317, retro_ggor_2385, retro_ggor_2483, retro_ggor_2589,
Loxodonta africana ENSLAFG00000013779 ortholog_one2one 1 retrogene
retro_lafr_681,
Macaca mulatta ENSMMUG00000016805 ortholog_one2one 3 retrogenes
retro_mmul_1751, retro_mmul_1850, retro_mmul_2210,
Nomascus leucogenys ENSNLEG00000005699 ortholog_one2one 5 retrogenes
retro_nleu_1364, retro_nleu_1724, retro_nleu_1979, retro_nleu_493, retro_nleu_606,
Oryctolagus cuniculus ENSOCUG00000010928 ortholog_one2one 7 retrogenes
retro_ocun_1321, retro_ocun_1378, retro_ocun_1497, retro_ocun_1716, retro_ocun_1717, retro_ocun_622, retro_ocun_686,
Ochotona princeps ENSOPRG00000010967 ortholog_one2one 5 retrogenes
retro_opri_190, retro_opri_51, retro_opri_653, retro_opri_747, retro_opri_997,
Procavia capensis ENSPCAG00000003791 ortholog_one2one 1 retrogene
retro_pcap_179,
Pongo abelii ENSPPYG00000004833 ortholog_one2one 7 retrogenes
retro_pabe_1286, retro_pabe_2368, retro_pabe_2840, retro_pabe_2914, retro_pabe_3031, retro_pabe_3054, retro_pabe_3552,
Pan troglodytes ENSPTRG00000022791 ortholog_one2one 3 retrogenes
retro_ptro_1046, retro_ptro_2327, retro_ptro_2396,
Rattus norvegicus ENSRNOG00000042740 possible_ortholog 4 retrogenes
retro_rnor_1383, retro_rnor_633, retro_rnor_729, retro_rnor_920,
Sus scrofa ENSSSCG00000030478 ortholog_one2one 4 retrogenes
retro_sscr_504, retro_sscr_505, retro_sscr_912, retro_sscr_946,
Ictidomys tridecemlineatus ENSSTOG00000026544 ortholog_one2many 12 retrogenes
retro_itri_1020, retro_itri_1132, retro_itri_1266, retro_itri_1285, retro_itri_1353, retro_itri_1695, retro_itri_1793, retro_itri_268, retro_itri_284, retro_itri_393, retro_itri_558, retro_itri_899,
Tarsius syrichta ENSTSYG00000006370 ortholog_one2one 3 retrogenes
retro_tsyr_1296, retro_tsyr_2113, retro_tsyr_276,
Tursiops truncatus ENSTTRG00000003312 ortholog_one2one 2 retrogenes
retro_ttru_1632, retro_ttru_416,
Vicugna pacos ENSVPAG00000007658 ortholog_one2one 1 retrogene
retro_vpac_336,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_722 91.60 84.40
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2. retro_cjac_1541 68.37 68.79
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3. retro_cjac_3684 78.69 73.17
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4. retro_cjac_3966 78.69 73.17
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Download FASTA sequences of all ENSCJAG00000032825 retrocopies