RetrogeneDB ID: | retro_ocun_1378 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 7:124696428..124696671(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL42 | ||
Ensembl ID: | ENSOCUG00000010928 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein L42 [Source:HGNC Symbol;Acc:14493] |
Percent Identity: | 62.35 % |
Parental protein coverage: | 57.75 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MAAAVMKWVISKRTILKH-LSPVQNG-ALYCVCHKSTYSPLPDDYNCKVELA-LTSDGRTIVCYHPSVDI |
.AA...K...SKR.I.KH.LSP.QN...L.CVC.KS.YS.LP.DY.CKVEL..LT.D.RTI.CYHPSVDI | |
Retrocopy | IAAITIKRMASKRAIMKH<LSPIQNR<TLCCVCRKSMYSHLPCDYYCKVELV<LTLDDRTIMCYHPSVDI |
Parental | PYEHTKPIPRPDPVL |
P..H.KP.P.PD..L | |
Retrocopy | PPDH*KPVP*PDLTL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 9 .71 RPM |
SRP017611_kidney | 0 .00 RPM | 24 .12 RPM |
SRP017611_liver | 0 .00 RPM | 5 .78 RPM |