Parental gene:

MRPL42, ENSBTAG00000002708

Aliases:None
Description:39S ribosomal protein L42, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P82927]
Organism:Cow (Bos taurus)
Coordinates:5:23426160..23456891(+)


>ENSBTAG00000002708
ATGGCATTGGCAGCAGTAAAATGGGCAATATCAAGCAGAACTATGTTGAAACATTTATTTCCAGTTGAAAACGGAGCCTT
ATATTGTGTTGGTCACAAATCTACATATTCTTCTCTTCCAGATGACTATAATTGCAAGGTAGAGCTTGCTCTGACATCTG
ATGCCAGGACAATTGTATGCTACCACCCTTCTGTGGACATTCCATATGAACACACAAAACCTATCCCTCGGCCAGATCCA
GTGCATAACAATGAAGAAACACATGATCTAGTACTGAAAACCAGATTAGAAGAAAAAAGTGAACACTTAGAGCAAGGACC
CATGATAGAACAACTCAGTAAAATGTTCTTTACTACCAAGCACCGTTGGTATCCTCGTGGACAGTATCATAGACGTCGTA
GGAAACTGAATCCTCCAAAAGACAGATGA

Library Parental gene expression (RPM)
SRP017611_brain 8 .68 RPM
SRP017611_kidney 15 .06 RPM
SRP017611_liver 13 .74 RPM
ERP005899_muscle 12 .19 RPM
ERP005899_liver 16 .51 RPM
SRP030211_testis 57 .69 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009832 ortholog_one2one 1 retrogene
retro_amel_403,
Callithrix jacchus ENSCJAG00000032825 ortholog_one2one 4 retrogenes
retro_cjac_1541, retro_cjac_3684, retro_cjac_3966, retro_cjac_722,
Homo sapiens ENSG00000198015 ortholog_one2one 3 retrogenes
retro_hsap_3427, retro_hsap_3528, retro_hsap_3844,
Gorilla gorilla ENSGGOG00000022760 ortholog_one2one 5 retrogenes
retro_ggor_1983, retro_ggor_2317, retro_ggor_2385, retro_ggor_2483, retro_ggor_2589,
Loxodonta africana ENSLAFG00000013779 ortholog_one2one 1 retrogene
retro_lafr_681,
Macaca mulatta ENSMMUG00000016805 ortholog_one2one 3 retrogenes
retro_mmul_1751, retro_mmul_1850, retro_mmul_2210,
Nomascus leucogenys ENSNLEG00000005699 ortholog_one2one 5 retrogenes
retro_nleu_1364, retro_nleu_1724, retro_nleu_1979, retro_nleu_493, retro_nleu_606,
Oryctolagus cuniculus ENSOCUG00000010928 ortholog_one2one 7 retrogenes
retro_ocun_1321, retro_ocun_1378, retro_ocun_1497, retro_ocun_1716, retro_ocun_1717, retro_ocun_622, retro_ocun_686,
Ochotona princeps ENSOPRG00000010967 ortholog_one2one 5 retrogenes
retro_opri_190, retro_opri_51, retro_opri_653, retro_opri_747, retro_opri_997,
Procavia capensis ENSPCAG00000003791 ortholog_one2one 1 retrogene
retro_pcap_179,
Pongo abelii ENSPPYG00000004833 ortholog_one2one 7 retrogenes
retro_pabe_1286, retro_pabe_2368, retro_pabe_2840, retro_pabe_2914, retro_pabe_3031, retro_pabe_3054, retro_pabe_3552,
Pan troglodytes ENSPTRG00000022791 ortholog_one2one 3 retrogenes
retro_ptro_1046, retro_ptro_2327, retro_ptro_2396,
Rattus norvegicus ENSRNOG00000042740 possible_ortholog 4 retrogenes
retro_rnor_1383, retro_rnor_633, retro_rnor_729, retro_rnor_920,
Sus scrofa ENSSSCG00000030478 ortholog_one2one 4 retrogenes
retro_sscr_504, retro_sscr_505, retro_sscr_912, retro_sscr_946,
Ictidomys tridecemlineatus ENSSTOG00000026544 ortholog_one2many 12 retrogenes
retro_itri_1020, retro_itri_1132, retro_itri_1266, retro_itri_1285, retro_itri_1353, retro_itri_1695, retro_itri_1793, retro_itri_268, retro_itri_284, retro_itri_393, retro_itri_558, retro_itri_899,
Tarsius syrichta ENSTSYG00000006370 ortholog_one2one 3 retrogenes
retro_tsyr_1296, retro_tsyr_2113, retro_tsyr_276,
Tursiops truncatus ENSTTRG00000003312 ortholog_one2one 2 retrogenes
retro_ttru_1632, retro_ttru_416,
Vicugna pacos ENSVPAG00000007658 ortholog_one2one 1 retrogene
retro_vpac_336,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_346 75.35 100.00
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2. retro_btau_775 71.60 57.04
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3. retro_btau_1395 75.00 66.20
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Download FASTA sequences of all ENSBTAG00000002708 retrocopies