Parental gene:

MRPL42, ENSSSCG00000030478

Aliases:None
Description:mitochondrial ribosomal protein L42 [Source:HGNC Symbol;Acc:14493]
Organism:Pig (Sus scrofa)
Coordinates:5:93584530..93601406(-)


>ENSSSCG00000030478
ATGGCACTGGCAGCAGTAAAATGGGTGATATCAAGTAGAACTATCTTGAAACATTTATTTCCAATTCAAAACAGCGCTTC
ATATTGTGTTTGTCATAAATCTACATATTCTTCTCTTCCAGATGACTATAATTGCAAAGTAGAGCTTGCTTTGACATCTG
ATGGCAGGACAATAGTATGCTATCACCCTTCTGTGGACATTCCATACGAACACACAAAACCTATCCCTCGTCCAGATCCT
GTACATAATATTGAAGAAACACATGATCTAGTGCTGAAAACCAGATTAGAAGAAAAAGGTGAACATTTAGAGCAAGGACC
CATGATAGAACAACTTAGCAAGATGTTCTTTACTACTAAGCACCGTTGGTATCCTCGTGGACAGTAA

Library Parental gene expression (RPM)
SRP014902_placenta 4 .25 RPM
SRP014902_testis 6 .65 RPM
SRP018288_heart 36 .33 RPM
SRP018288_kidney 16 .06 RPM
SRP018288_liver 13 .59 RPM
SRP018288_lung 7 .13 RPM
SRP018856_adipose 4 .85 RPM
SRP035408_brain 20 .20 RPM
SRP035408_liver 23 .43 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009832 ortholog_one2one 1 retrogene
retro_amel_403,
Bos taurus ENSBTAG00000002708 ortholog_one2one 3 retrogenes
retro_btau_1395, retro_btau_346, retro_btau_775,
Callithrix jacchus ENSCJAG00000032825 ortholog_one2one 4 retrogenes
retro_cjac_1541, retro_cjac_3684, retro_cjac_3966, retro_cjac_722,
Homo sapiens ENSG00000198015 ortholog_one2one 3 retrogenes
retro_hsap_3427, retro_hsap_3528, retro_hsap_3844,
Gorilla gorilla ENSGGOG00000022760 ortholog_one2one 5 retrogenes
retro_ggor_1983, retro_ggor_2317, retro_ggor_2385, retro_ggor_2483, retro_ggor_2589,
Loxodonta africana ENSLAFG00000013779 ortholog_one2one 1 retrogene
retro_lafr_681,
Macaca mulatta ENSMMUG00000016805 ortholog_one2one 3 retrogenes
retro_mmul_1751, retro_mmul_1850, retro_mmul_2210,
Nomascus leucogenys ENSNLEG00000005699 ortholog_one2one 5 retrogenes
retro_nleu_1364, retro_nleu_1724, retro_nleu_1979, retro_nleu_493, retro_nleu_606,
Oryctolagus cuniculus ENSOCUG00000010928 ortholog_one2one 7 retrogenes
retro_ocun_1321, retro_ocun_1378, retro_ocun_1497, retro_ocun_1716, retro_ocun_1717, retro_ocun_622, retro_ocun_686,
Ochotona princeps ENSOPRG00000010967 ortholog_one2one 5 retrogenes
retro_opri_190, retro_opri_51, retro_opri_653, retro_opri_747, retro_opri_997,
Procavia capensis ENSPCAG00000003791 ortholog_one2one 1 retrogene
retro_pcap_179,
Pongo abelii ENSPPYG00000004833 ortholog_one2one 7 retrogenes
retro_pabe_1286, retro_pabe_2368, retro_pabe_2840, retro_pabe_2914, retro_pabe_3031, retro_pabe_3054, retro_pabe_3552,
Pan troglodytes ENSPTRG00000022791 ortholog_one2one 3 retrogenes
retro_ptro_1046, retro_ptro_2327, retro_ptro_2396,
Rattus norvegicus ENSRNOG00000042740 possible_ortholog 4 retrogenes
retro_rnor_1383, retro_rnor_633, retro_rnor_729, retro_rnor_920,
Ictidomys tridecemlineatus ENSSTOG00000026544 ortholog_one2many 12 retrogenes
retro_itri_1020, retro_itri_1132, retro_itri_1266, retro_itri_1285, retro_itri_1353, retro_itri_1695, retro_itri_1793, retro_itri_268, retro_itri_284, retro_itri_393, retro_itri_558, retro_itri_899,
Tarsius syrichta ENSTSYG00000006370 ortholog_one2one 3 retrogenes
retro_tsyr_1296, retro_tsyr_2113, retro_tsyr_276,
Tursiops truncatus ENSTTRG00000003312 ortholog_one2one 2 retrogenes
retro_ttru_1632, retro_ttru_416,
Vicugna pacos ENSVPAG00000007658 ortholog_one2one 1 retrogene
retro_vpac_336,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_504 77.33 58.59
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2. retro_sscr_505 78.67 58.59
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3. retro_sscr_912 83.33 51.56
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4. retro_sscr_946 83.33 51.56
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Download FASTA sequences of all ENSSSCG00000030478 retrocopies