RetrogeneDB ID: | retro_pabe_1286 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 15:36912398..36912733(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL42 | ||
Ensembl ID: | ENSPPYG00000004833 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein L42 [Source:HGNC Symbol;Acc:14493] |
Percent Identity: | 70.18 % |
Parental protein coverage: | 79.58 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | VCHKSTYSPLPDDYNCSVELAVTSDGRTIVCYHPSVDIPYEHTKPIPRPDPVHNNEETHDQVLKTRLEEK |
VCHKS.YS..P.DYNC.V..A.T.D.RTIVCYHPS.DIPYE.TKPIP.PDPV.NNEETH.QVLKTR.EEK | |
Retrocopy | VCHKSPYSSFPGDYNCKVDFALTPDTRTIVCYHPSIDIPYERTKPIP*PDPVYNNEETHGQVLKTR-EEK |
Parental | VEHLEEGPMIEQLSKMFFT-TKHRWYPHGRYHRCRKNLNPPKDR |
.EHLE..P.IEQLSKMFF..TK..W...G..HRC.K.L..P.DR | |
Retrocopy | SEHLEQEPIIEQLSKMFFI<TKYGWHLRGH*HRCQKKLDAPEDR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .22 RPM | 11 .89 RPM |
SRP007412_cerebellum | 0 .24 RPM | 28 .21 RPM |
SRP007412_heart | 0 .03 RPM | 20 .05 RPM |
SRP007412_kidney | 0 .10 RPM | 30 .13 RPM |
SRP007412_liver | 0 .09 RPM | 11 .78 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1046 |
Macaca mulatta | retro_mmul_2210 |