Parental gene:

HNRNPA3, ENSPVAG00000010380

Aliases:None
Description:heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:24941]
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_2973:82919..88177(+)


>ENSPVAG00000010380
ATGGAGGTAAAACCGCCGCCCGGTCGCCCCCAGCCCGACTCCGGCCGTCGCCGCCGCCGCCGGGGGGAGGAGGGCCATGA
TCCGAAGGAACCAGAGCAGTTGAGAAAACTGTTTATTGGTGGTCTGAGCTTTGAAACTACAGATGATAGTTTAAGAGAAC
ATTTTGAAAAATGGGGTACACTCACAGATTGTGTGGTGATGAGAGACCCCCAAACAAAACGTTCCAGGGGGTTTGGTTTT
GTGACATACTCTTGTGTTGAAGAGGTGGATGCAGCAATGTGTGCTCGACCACACAAGGTTGATGGGCGTGTAGTGGAACC
AAAGAGAGCTGTGTCTAGAGAGGATTCGGTAAAGCCTGGAGCCCATCTAACAGTGAAGAAAATTTTCGTTGGTGGTATTA
AAGAAGATACAGAAGAATATAATTTGAGAGACTACTTTGAAAAGTATGGCAAGATTGAAACCATAGAAGTTATGGAAGAC
AGGCAGAGTGGAAAAAAAAGAGGATTTGCTTTTGTAACTTTTGATGATCATGATACAGTTGATAAAATTGTTGTTCAGAA
ATACCACACTATTAATGGGCATAATTGTGAAGTGAAAAAAGCCCTTTCTAAACAAGAAATGCAGTCTGCTGGATCACAAA
GAGGTCGTGGTGGTGGATCTGGCAACTTTATGGGTCGTGGAGGAAACTTTGGAGGTGGTGGGGGTAACTTTGGCCGTGGT
GGAAACTTTGGTGGAAGAGGAGGCTATGGTGGTGGAGGTGGCAGCAGAGGTAGTTATGGAGGAGGTGATGGTGGATATAA
TGGATTTGGAGGTGATGGTGGCAACTATGGCGGTGGTCCTGGTTATAGTAGTAGAGGAGGCTATGGTGGTGGTGGTGGTG
GAGGACCAGGAGGATATGGAAACCAAGGTGGTGGATATGGTGGTGGAGGATATGATGGTTACAATGAAGGGGGAAATTTT
GGCGGTAACTATGGTGGTGGTGGGAACTATAATGATTTTGGAAATTACAGTGGACAACAGCAATCAAATTACGGACCCAT
GAAGGGAGGGGGCAGTTTTGGTGGAAGAAGCTCGGGCAGTCCCTATGGTGGTGGTTATGGATCTGGTGGTGGAAGTGGTG
GATATGGTAGCAGAAGGTTCTAA

Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000013497 ortholog_one2one 12 retrogenes
retro_cfam_1214, retro_cfam_1326, retro_cfam_1388, retro_cfam_1548, retro_cfam_1690, retro_cfam_1816, retro_cfam_265, retro_cfam_272, retro_cfam_400, retro_cfam_625, retro_cfam_65, retro_cfam_836,
Ficedula albicollis ENSFALG00000003215 ortholog_one2one 1 retrogene
retro_falb_15,
Gallus gallus ENSGALG00000009250 ortholog_one2one 1 retrogene
retro_ggal_10,
Macropus eugenii ENSMEUG00000013622 ortholog_one2one 6 retrogenes
retro_meug_1264, retro_meug_1760, retro_meug_1913, retro_meug_238, retro_meug_470, retro_meug_56,
Mus musculus ENSMUSG00000059005 possible_ortholog 6 retrogenes
retro_mmus_133, retro_mmus_1359, retro_mmus_1409, retro_mmus_210, retro_mmus_3635, retro_mmus_60,
Oryctolagus cuniculus ENSOCUG00000002743 possible_ortholog 2 retrogenes
retro_ocun_994, retro_ocun_995,
Otolemur garnettii ENSOGAG00000028132 ortholog_one2one 7 retrogenes
retro_ogar_1869, retro_ogar_1924, retro_ogar_2222, retro_ogar_2590, retro_ogar_3215, retro_ogar_600, retro_ogar_814,
Pelodiscus sinensis ENSPSIG00000003011 ortholog_one2one 1 retrogene
retro_psin_16,
Pteropus vampyrus ENSPVAG00000000322 within_species_paralog 9 retrogenes
retro_pvam_1133, retro_pvam_1230, retro_pvam_1313, retro_pvam_1370, retro_pvam_196, retro_pvam_300, retro_pvam_453, retro_pvam_643, retro_pvam_859,
Sus scrofa ENSSSCG00000015988 ortholog_one2one 6 retrogenes
retro_sscr_1110, retro_sscr_1152, retro_sscr_391, retro_sscr_621, retro_sscr_764, retro_sscr_927,
Xenopus tropicalis ENSXETG00000001806 ortholog_one2one 1 retrogene
retro_xtro_11,
Xiphophorus maculatus ENSXMAG00000000439 ortholog_one2one 1 retrogene
retro_xmac_2,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pvam_326 71.43 72.63
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2. retro_pvam_1077 58.25 53.95
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Download FASTA sequences of all ENSPVAG00000010380 retrocopies