RetrogeneDB ID: | retro_pabe_1899 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 22:25076346..25077070(-) | ||
Located in intron of: | ENSPPYG00000011701 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSPPYG00000025869 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S3a [Source:RefSeq peptide;Acc:NP_001126750] |
Percent Identity: | 80.82 % |
Parental protein coverage: | 92.05 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | VDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVAFRKFKLI-TED |
.DPFSKKDWYDVKAPAMF.I...GKTL.TRTQG.KIASDGLKG.VFEVSL.D.QNDEVAFRKFKLI.TED | |
Retrocopy | LDPFSKKDWYDVKAPAMFSIITMGKTLITRTQGIKIASDGLKGHVFEVSLSDVQNDEVAFRKFKLI<TED |
Parental | VQGKN-CLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQ |
VQGKN.CLTNFHG.DLT.DKMCSMVKK.QTMI..H.DVKTT..YLL.LFCV.FTKK.NN.IRKTSY..H. | |
Retrocopy | VQGKN<CLTNFHGIDLTCDKMCSMVKK*QTMIKVHIDVKTTNDYLLCLFCVDFTKKCNNYIRKTSYN*H* |
Parental | QVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLM |
QV.QI.KKMMEIMT.EVQTND.KEVVNKLIPDS.GKD.EKAC.SIYPLH.VF.RKVK..KKPKFELGKLM | |
Retrocopy | QVCQIQKKMMEIMTQEVQTNDFKEVVNKLIPDSTGKDTEKACLSIYPLHGVFIRKVK-IKKPKFELGKLM |
Parental | ELHGEGSSSGKATGDETGAKVERADGYEPPVQESV |
.LHGEGSS..KAT.DE.GAK.E.ADGYEP.V.ESV | |
Retrocopy | *LHGEGSSFEKATKDEKGAKIE*ADGYEPSVHESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 71 .93 RPM |
SRP007412_cerebellum | 0 .00 RPM | 99 .96 RPM |
SRP007412_heart | 0 .00 RPM | 95 .16 RPM |
SRP007412_kidney | 0 .00 RPM | 145 .71 RPM |
SRP007412_liver | 0 .00 RPM | 124 .70 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2578 |