RetrogeneDB ID: | retro_pabe_550 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 10:94506037..94506825(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSPPYG00000025869 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S3a [Source:RefSeq peptide;Acc:NP_001126750] |
Percent Identity: | 90.19 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MAVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLK-GRVFEV |
M.VGKNK.LTKG.KKGAKKKV.DPFSKKDWY.VKA.AMFNIRNIGKTLVTRTQGTKIASDGL..G.VFEV | |
Retrocopy | MVVGKNKCLTKGSKKGAKKKVMDPFSKKDWYNVKAAAMFNIRNIGKTLVTRTQGTKIASDGLE<GCVFEV |
Parental | SLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFC |
SL.DLQNDEVAFRKFKLITEDVQGKNCLTNFHGM.L.RDKMCSMVKKWQTMIEAHVDVKTT.GYLL.LFC | |
Retrocopy | SLVDLQNDEVAFRKFKLITEDVQGKNCLTNFHGMNLIRDKMCSMVKKWQTMIEAHVDVKTTHGYLLCLFC |
Parental | VGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHD |
.GFTKKRNNQIRKTSYAQHQQVRQI...MME.MT.EVQTNDLKEVVNKLI.DSIGKDIEKACQSIYPLHD | |
Retrocopy | IGFTKKRNNQIRKTSYAQHQQVRQI-QRMMEMMTQEVQTNDLKEVVNKLILDSIGKDIEKACQSIYPLHD |
Parental | VFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV |
VFVRKVKMLKK.KFELGKLMELHGEGSSSGKATGD.TGAK.E.ADGYE.PVQESV | |
Retrocopy | VFVRKVKMLKKFKFELGKLMELHGEGSSSGKATGDKTGAKAE*ADGYE*PVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 71 .93 RPM |
SRP007412_cerebellum | 0 .00 RPM | 99 .96 RPM |
SRP007412_heart | 0 .00 RPM | 95 .16 RPM |
SRP007412_kidney | 0 .07 RPM | 145 .71 RPM |
SRP007412_liver | 0 .03 RPM | 124 .70 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_613 |