RetrogeneDB ID: | retro_pabe_2779 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 5:127194961..127195517(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSPPYG00000025869 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S3a [Source:RefSeq peptide;Acc:NP_001126750] |
Percent Identity: | 50.52 % |
Parental protein coverage: | 70.83 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 5 |
Parental | DWYDVK-APAMFNIRNI-GKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGKNC |
DW..VK.A..MFNI.NI.G.........TKI.SD.LK....EVSLADLQ......RK.K.IT..V.G.N. | |
Retrocopy | DWCNVK<AQTMFNI*NI>GRLTSCKDSKTKIVSDDLKNCIIEVSLADLQSNGITLRKLKIITKIVLGENS |
Parental | LTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVG-FTKKR-NNQIRKTSYAQHQQVRQI |
L.N.HG.....D..CS..KK..T.....V.VKTTDGYLL.LFCVG.F.KK..NN....TS.A.......I | |
Retrocopy | LCNSHGINFVMDRKCSPFKKLKTIFGVAV-VKTTDGYLLCLFCVG>FNKKL>NNLMQITS*AGVRDL-PI |
Parental | RKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQ-SIYPLHDVFVRKV |
.KKM.EIM..E......KEV.NKLIP.S.....EK.....IYPLHD..VRKV | |
Retrocopy | QKKMTEIMA*EGRRMT*KEVFNKLIPKSV*DNTEKDYD<CIYPLHDTLVRKV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 71 .93 RPM |
SRP007412_cerebellum | 0 .00 RPM | 99 .96 RPM |
SRP007412_heart | 0 .00 RPM | 95 .16 RPM |
SRP007412_kidney | 0 .00 RPM | 145 .71 RPM |
SRP007412_liver | 0 .00 RPM | 124 .70 RPM |