RetrogeneDB ID: | retro_pvam_311 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_2471:346973..347654(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSPVAG00000015406 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 61.44 % |
Parental protein coverage: | 88.26 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | AVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSL |
AVG.NKRLT.GGKKGA.K.VVD.F.K.DW..V.APA...IRN.G.T.VTRT.G.KI..D....RVFEVS. | |
Retrocopy | AVGRNKRLTRGGKKGAEKIVVDSFVKEDWHNV*APALLHIRNVGETPVTRTRGSKIEPD----RVFEVSP |
Parental | ADLQNDEVAFRKFKLITEDV-QGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCV |
ADLQN.E.A.RKFKL.TED...G.N....F.G..LT..K.CS..KKWQT.IEAHV.VKT.DGYLL.LFCV | |
Retrocopy | ADLQNEEAALRKFKLTTEDA<LGQNS-PHFRGRALTWAKTCSLSKKWQTVIEAHVVVKTPDGYLLLLFCV |
Parental | GFTKKRNNQIRKTSYAQHQQV-RQIRKKMME-IMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLH |
GF..K....IRKTSYAQ.....R.I..KMME.I.TREV.T.DLKEV...LIPD..G.D..K.C...Y.LH | |
Retrocopy | GFI*KCSSRIRKTSYAQGPRA<RRIWEKMME<IVTREV*THDLKEVASTLIPDGTGEDTQKSCRPAYRLH |
Parental | DVFVRKVKMLKKPKFELGKLMELHGE |
.V.VRKV...KK..FELGKL.EL... | |
Retrocopy | GVLVRKVQTPKKTRFELGKLTELRSQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |