RetrogeneDB ID: | retro_mputfur_504 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL896916.1:11657015..11657808(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMPUG00000017741 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSMPUG00000007139 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 81.65 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MAVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLK-GRVFEV |
MAVGKNK.L.KGG.KG.KKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQG.KIAS.GLK.G.VF.. | |
Retrocopy | MAVGKNKCLKKGGEKGGKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGAKIASNGLK<GCVFDR |
Parental | SLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFC |
SL.DL.ND...FRKFK.I.E.VQGK.CLTNFHGMDLT..KMCSM.KK.QTMIEAHV.VKTTDGYLL.LF. | |
Retrocopy | SLDDLKNDKAEFRKFKRIIEVVQGKDCLTNFHGMDLTHGKMCSMAKKQQTMIEAHVYVKTTDGYLLHLFS |
Parental | VGFTKKRNNQIRKTSYAQHQQVRQI-RKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLH |
VGFTKK.NN.I.KTS.AQH.QV.QI.RKKMMEIMT.E..TNDLKE.VNKLIPDSI.K.IEK.CQ.IYPLH | |
Retrocopy | VGFTKKCNNPIQKTS*AQHEQVHQI>RKKMMEIMTQEAPTNDLKEAVNKLIPDSIRKGIEKVCQPIYPLH |
Parental | D-VFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV |
D.VFVRKVKMLKKPKFELGKLM.L.G.G..SGKA.GDETGAKVERADG.EPPVQESV | |
Retrocopy | D>VFVRKVKMLKKPKFELGKLMGLRGGGGNSGKAPGDETGAKVERADGDEPPVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |