RetrogeneDB ID: | retro_pvam_486 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_3428:1422987..1423410(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSPVAG00000015406 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 73.65 % |
Parental protein coverage: | 54.17 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | MAVGKN-KRLTKGGKKGAKKKVVDPFSKK-DWYDVKAPAMFNIRNIGKT-LVTRTQGTK-IASDGLKGRV |
MAVGKN...LTK.GKK.A.KK.V.....K.DWY..KA.AMF..RNIGKT..V.RT.GTK...SDGLK.RV | |
Retrocopy | MAVGKN<QLLTKRGKKRA-KKKVANRFSK<DWYNMKALAMFSGRNIGKT<IVMRTPGTK<VTSDGLKVRV |
Parental | FEVSLADLQNDEVAFRKFKL-ITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLL |
FEVSLADLQND.V.FRKFKL.ITE.VQGKNCLT.FHGMDLT.DKM.S.VKKWQTMIEAHVD.KTTD.YLL | |
Retrocopy | FEVSLADLQNDDVSFRKFKL>ITEGVQGKNCLTSFHGMDLTGDKMYSTVKKWQTMIEAHVDDKTTDDYLL |
Parental | RLFCVGFT |
.LF.V.FT | |
Retrocopy | CLFWVAFT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |