RetrogeneDB ID: | retro_cpor_646 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_21:14150981..14151417(+) | ||
Located in intron of: | ENSCPOG00000013436 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSCPOG00000015569 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.28 % |
Parental protein coverage: | 56.06 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 5 |
Parental | WQTMI-EAHVDVKTTDGYLL-RLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEV |
WQTM..EAHVDVKT.D..LL..LFCVGFT.K.NNQ...TS.AQHQQVRQI.K..MEI...E..TN..K.. | |
Retrocopy | WQTMM<EAHVDVKTADDKLL<LLFCVGFTEKCNNQTQQTSNAQHQQVRQI*KRIMEIIIGEMRTN*RK*S |
Parental | VNKLIPDSIGK-DIEKACQSIYPLHDVFVRKVKM-LKKPKFELGKLMELHGEGSSSGKATGDETGAKVER |
.N.......GK.D.EKACQSIYPLHDVFVRK.KM..KKPKF.LGKLMELHG.G.SSGKA.G.ETGA.VER | |
Retrocopy | MN-*FQTALGK<DTEKACQSIYPLHDVFVRKIKM<VKKPKFKLGKLMELHGAGGSSGKAAGAETGA*VER |
Parental | ADGY-EPPVQESV |
AD...EPPVQESV | |
Retrocopy | ADDV<EPPVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 98 .41 RPM |
SRP017611_kidney | 0 .00 RPM | 192 .73 RPM |
SRP017611_liver | 0 .00 RPM | 127 .66 RPM |
SRP040447_lung | 0 .00 RPM | 307 .85 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 268 .71 RPM |