RetrogeneDB ID: | retro_pabe_2324 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 3:96721890..96722220(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PHF5A | ||
Ensembl ID: | ENSPPYG00000011870 | ||
Aliases: | None | ||
Description: | PHD finger protein 5A [Source:HGNC Symbol;Acc:18000] |
Percent Identity: | 84.55 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAY |
MAKHHP.LIFC.K.AGV.IGRLCEKCD.K.VICDS.VRPCTL..ICDECNY.SYQG.CVICGGPGVS.AY | |
Retrocopy | MAKHHPNLIFCCKPAGVVIGRLCEKCDSKRVICDSSVRPCTLMCICDECNYVSYQGCCVICGGPGVSGAY |
Parental | YCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR |
YCK.CTIQEKDRDGCPKIVNLGSSKTD.FYE.KK..FKKR | |
Retrocopy | YCKQCTIQEKDRDGCPKIVNLGSSKTDFFYEHKKCSFKKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 9 .29 RPM |
SRP007412_cerebellum | 0 .12 RPM | 10 .70 RPM |
SRP007412_heart | 0 .00 RPM | 5 .24 RPM |
SRP007412_kidney | 0 .03 RPM | 10 .11 RPM |
SRP007412_liver | 0 .00 RPM | 7 .41 RPM |