RetrogeneDB ID: | retro_ggor_1965 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 3:112689049..112689381(-) | ||
Located in intron of: | ENSGGOG00000005969 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PHF5A | ||
Ensembl ID: | ENSGGOG00000001104 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.71 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDE-CNYGSYQGRCVICGGPGVSDA |
MAK.HPDLIFC.KQ.G.AIGRLCEKCDGKCVICDSYV.PCTL..ICDE...YGSYQ..CVICGGPGVSDA | |
Retrocopy | MAKRHPDLIFCCKQTGIAIGRLCEKCDGKCVICDSYVHPCTLMHICDE>VKYGSYQRCCVICGGPGVSDA |
Parental | YYCKE-CTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR |
YYCKE.CTIQEKDRDGCPKIV.LG.SKTDLFYE.KKYGFKKR | |
Retrocopy | YYCKE>CTIQEKDRDGCPKIVCLGNSKTDLFYECKKYGFKKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .10 RPM | 9 .64 RPM |
SRP007412_cerebellum | 0 .20 RPM | 12 .29 RPM |
SRP007412_heart | 0 .06 RPM | 4 .07 RPM |
SRP007412_kidney | 0 .29 RPM | 15 .01 RPM |
SRP007412_liver | 0 .11 RPM | 8 .99 RPM |
SRP007412_testis | 0 .52 RPM | 16 .27 RPM |